GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003116-TA|BGIBMGA003116-PA|IPR004839|Aminotransferase,
class I and II, IPR000796|Aspartate/other aminotransferase,
IPR004838|Aminotransferases class-I pyridoxal-phosphate-binding site
         (362 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 15/64 (23%)

Query: 299  NPHPWQHITDQIGM---FCFTGLKPEQVERLTKEFH------------VYLTKDGRISVA 343
            N   W  +++ + M   F  T L+P  V +L  E H            V LTK+G +S  
Sbjct: 1540 NEFHWTLVSNSVKMQRRFVVTNLQPSSVYQLKVETHNVAGSNQAEFTFVTLTKEGELSKR 1599

Query: 344  GISS 347
            GI+S
Sbjct: 1600 GIAS 1603


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 15/64 (23%)

Query: 299  NPHPWQHITDQIGM---FCFTGLKPEQVERLTKEFH------------VYLTKDGRISVA 343
            N   W  +++ + M   F  T L+P  V +L  E H            V LTK+G +S  
Sbjct: 1536 NEFHWTLVSNSVKMQRRFVVTNLQPSSVYQLKVETHNVAGSNQAEFTFVTLTKEGELSKR 1595

Query: 344  GISS 347
            GI+S
Sbjct: 1596 GIAS 1599


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.134    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,983
Number of Sequences: 429
Number of extensions: 4171
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 2
length of query: 362
length of database: 140,377
effective HSP length: 59
effective length of query: 303
effective length of database: 115,066
effective search space: 34864998
effective search space used: 34864998
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)