GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003113-TA|BGIBMGA003113-PA|IPR002345|Lipocalin,
IPR002909|Cell surface receptor IPT/TIG
         (490 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   1.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   3.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   3.3  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 18/66 (27%), Positives = 26/66 (39%)

Query: 174 KVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVENGNFHASSTQWGAFT 233
           K I+ PS ++    N    +   T V  F+ LR    S     +  G    + TQW    
Sbjct: 367 KEITVPSNEETIDINNGAELMQETHVCFFSLLRDAFTSKGEYRMSTGEMKEAITQWQGNP 426

Query: 234 IHLLDD 239
           I  L+D
Sbjct: 427 ISPLND 432


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 127  DLNNGKQYCAAKTLYISDSDKRKH 150
            +LN+GK+   AK  Y   +D ++H
Sbjct: 1259 ELNHGKRTLPAKNTYFEATDLQQH 1282


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 127  DLNNGKQYCAAKTLYISDSDKRKH 150
            +LN+GK+   AK  Y   +D ++H
Sbjct: 1255 ELNHGKRTLPAKNTYFEATDLQQH 1278


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.135    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,587
Number of Sequences: 429
Number of extensions: 5284
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 4
length of query: 490
length of database: 140,377
effective HSP length: 60
effective length of query: 430
effective length of database: 114,637
effective search space: 49293910
effective search space used: 49293910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)