GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003108-TA|BGIBMGA003108-PA|undefined
         (203 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    26   0.29 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   0.88 
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    23   2.7  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   2.7  

>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 114 HHATTIHRSSRPDHQRLGSHISGVAV 139
           HH   +HR  +P++  L S   G AV
Sbjct: 26  HHNGVVHRDLKPENLLLASKAKGAAV 51


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 16/70 (22%), Positives = 30/70 (42%)

Query: 91  SLNRTIAADSPRFLVLRHAPTLPHHATTIHRSSRPDHQRLGSHISGVAVLHHMDYSRYTR 150
           +L +  +A++   ++++H  +  H   T   +  P  Q   S     A L    +S   R
Sbjct: 649 ALRQKDSAEAEPAVIVQHTQSQLHLHLTSPPARSPSSQAQASQCPQTASLLSSTHSTLAR 708

Query: 151 SIQSQSRLTA 160
           S+    R+TA
Sbjct: 709 SLMEGPRMTA 718


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 11/43 (25%), Positives = 17/43 (39%)

Query: 145 YSRYTRSIQSQSRLTAHFEQHWRHSRSIQAQFRLTANFEHHWR 187
           + R+TR    ++ +  H  +   H      QF   AN   H R
Sbjct: 16  HKRFTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLR 58


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query: 111 TLPHHATTIHRSSRPDHQR 129
           T  HH    HR  R D++R
Sbjct: 153 TTLHHGMAYHRGHRKDYER 171


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.130    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,501
Number of Sequences: 429
Number of extensions: 1838
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 203
length of database: 140,377
effective HSP length: 55
effective length of query: 148
effective length of database: 116,782
effective search space: 17283736
effective search space used: 17283736
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 42 (21.0 bits)