GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003107-TA|BGIBMGA003107-PA|IPR001202|WW/Rsp5/WWP
         (361 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   1.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   5.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   9.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   9.4  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 166  PRTEEDKLAGKLEIKRYKQTXXXXXXXXXXXXQ-KVMLASGKLKLRPGQAKLP 217
            PR   D    KL I + K              + KV+L S K+K  PG    P
Sbjct: 1475 PRINPDNHNEKLHIPKDKSVSVLSRENEAGQKEVKVLLGSDKIKFVPGTTSQP 1527


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 6/20 (30%), Positives = 13/20 (65%)

Query: 49  DTGEVLLPSQWRSTVDPRGR 68
           + G ++LP +W+  +D  G+
Sbjct: 319 ERGIMMLPERWQKVIDQNGQ 338


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)

Query: 143 EHALLHMRPRKR 154
           +H  LHM+PRK+
Sbjct: 387 QHCELHMQPRKK 398


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)

Query: 143 EHALLHMRPRKR 154
           +H  LHM+PRK+
Sbjct: 387 QHCELHMQPRKK 398


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,541
Number of Sequences: 429
Number of extensions: 1982
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 4
length of query: 361
length of database: 140,377
effective HSP length: 59
effective length of query: 302
effective length of database: 115,066
effective search space: 34749932
effective search space used: 34749932
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)