GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003106-TA|BGIBMGA003106-PA|IPR006560|AWS, IPR001214|SET,
IPR003616|Post-SET zinc-binding region
         (1210 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    85   3e-18
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   8.6  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 85.0 bits (201), Expect = 3e-18
 Identities = 52/152 (34%), Positives = 72/152 (47%), Gaps = 10/152 (6%)

Query: 588 ECNSRCPVGDRCTNRRFQKRENAAIKVFY-ADKKGCGVEANVDIPTGEFLMEYGGEVLDY 646
           ECN RC     C NR  Q+       +F  A+ +G GV+    I  G F+ +Y GEV+  
Sbjct: 473 ECNKRCNCDIDCINRVVQRGTKMQFCIFRTANGRGWGVKTMKTIKKGSFVTQYVGEVITN 532

Query: 647 EQFYKRAQAYSDENNLHHYFMSLKGDT-----VIDATMKGNISRFINHSCDPNAETQKWT 701
           E+  KR + Y      + + +            +DA + GNIS FINHSCDPN       
Sbjct: 533 EEAEKRGKEYDAAGRTYLFDLDYNESEEQCPYTVDAAIYGNISHFINHSCDPNLAVYGVW 592

Query: 702 VN----GELRIGFFSKRDIVVGEEITFDYQFQ 729
           +N       ++  F+ +DI   EEITFDY  Q
Sbjct: 593 INCLDPNLPKLALFATKDIKQNEEITFDYMCQ 624


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 7/60 (11%)

Query: 170 DISPLTVIHQASENHERELDEQKNRDLESPSILDDNSQITDDF---DEK-IEITRKESPV 225
           DI P T   +  E ++++LD      ++ P  LDD   I DD    DE+ I I  KE  V
Sbjct: 315 DIPPET---EEEEENDKKLDLDSIDMMQLPIQLDDGIDILDDVKCEDERVISIPDKEITV 371


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.130    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 281,816
Number of Sequences: 429
Number of extensions: 11899
Number of successful extensions: 25
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 2
length of query: 1210
length of database: 140,377
effective HSP length: 66
effective length of query: 1144
effective length of database: 112,063
effective search space: 128200072
effective search space used: 128200072
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 49 (23.8 bits)