GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003105-TA|BGIBMGA003105-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR009003|Peptidase, trypsin-like serine and
cysteine
         (207 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    39   4e-05
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   1.2  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   2.7  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   8.4  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   8.4  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   8.4  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 38.7 bits (86), Expect = 4e-05
 Identities = 52/203 (25%), Positives = 90/203 (44%), Gaps = 26/203 (12%)

Query: 5   VLTAAHCMDD-----IRIKSGEIHAFFGSNVPKDSSVIRRVGNYEINPKYN--EVNGKNN 57
           VLTAAHC+ D     + I  GE H  + S    +++V+  +    I+PKY+  E +    
Sbjct: 198 VLTAAHCIIDENTTKLAIVVGE-HD-WSSKTETNATVLHSINKVIIHPKYDIIEKDDWQI 255

Query: 58  LAVAFLDYRVPLRQGIKKIPLSI-----RDPVPRTDLFSVGWGKQSLEKLGDFSSRRSLK 112
             +A L     ++ G K  P  +      D    +D+  +GWG  S    G  S    L+
Sbjct: 256 NDIALLKTEKDIKFGDKVGPACLPFQHFLDSFAGSDVTVLGWGHTSFN--GMLS--HILQ 311

Query: 113 ATKQEIMTQQECRQITGYNVGGGTLCCVPIIGNNHKDDAGNGLVTSQPQ----ILVGVLS 168
            T   ++TQ EC +  G N+    +C      +  + D+G  ++   P+    + +G++S
Sbjct: 312 KTTLNMLTQVECYKYYG-NIMVNAMCAYAKGKDACQMDSGGPVLWQNPRTKRLVNIGIIS 370

Query: 169 YIADGYSVYTG---VAVHRDWII 188
           + A+      G   V  + DWI+
Sbjct: 371 WGAECGKYPNGNTKVGSYIDWIV 393


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 82  DPVPRTDLFSVGWGKQSLEKLGDFSSRRSLKATKQEIMTQQECRQITGYNVGGGTLCCVP 141
           D +   +L  V   K  + K+G    +R++KA  +    + +  +  G  VGG  LC +P
Sbjct: 417 DEMSLRELTQVTEEKPRVMKMG----KRNIKAQVKRFRMETKAAKTLGIIVGGFILCWLP 472


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 12/44 (27%), Positives = 20/44 (45%)

Query: 43  YEINPKYNEVNGKNNLAVAFLDYRVPLRQGIKKIPLSIRDPVPR 86
           Y  N KYN  N   N  + + +Y + + Q    +P+   +  PR
Sbjct: 98  YNYNNKYNYNNNNYNKKLYYKNYIINIEQIPVPVPVYYGNFPPR 141


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 2/39 (5%)

Query: 42  NYEINPKYNEVNGKNNLAVAFLDYRVPLRQGIKKIPLSI 80
           NY  N  YN  N   N     L Y   +   I++IP+ +
Sbjct: 91  NYNYNNNYNNYNNNYNTNYKKLQYYNII--NIEQIPVPV 127


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 170 IADGYSVYTGVAVHRD 185
           + DG  + TG+ VHR+
Sbjct: 286 VKDGIVLATGITVHRN 301


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 170 IADGYSVYTGVAVHRD 185
           + DG  + TG+ VHR+
Sbjct: 286 VKDGIVLATGITVHRN 301


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.137    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,273
Number of Sequences: 429
Number of extensions: 3054
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 6
length of query: 207
length of database: 140,377
effective HSP length: 55
effective length of query: 152
effective length of database: 116,782
effective search space: 17750864
effective search space used: 17750864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)