GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003103-TA|BGIBMGA003103-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR009003|Peptidase, trypsin-like serine and
cysteine, IPR001314|Peptidase S1A, chymotrypsin
         (271 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    34   0.002
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   5.1  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   6.7  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   6.7  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   8.9  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 33.9 bits (74), Expect = 0.002
 Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 13/128 (10%)

Query: 37  CGASIITQNIVMTAAHCL---KCCGNGIIKGILINTGHENKDLGITSSGHKYAIHSGHD- 92
           CGA+II++  V+TAAHC+         I+ G    +     +  +  S +K  IH  +D 
Sbjct: 188 CGATIISKRYVLTAAHCIIDENTTKLAIVVGEHDWSSKTETNATVLHSINKVIIHPKYDI 247

Query: 93  ---SESAVYDIALVLLKTQLKLSANCSRVALMKYPPYD----EEAYVSGWGFVNCCGNGI 145
               +  + DIAL+  +  +K         L      D     +  V GWG  +   NG+
Sbjct: 248 IEKDDWQINDIALLKTEKDIKFGDKVGPACLPFQHFLDSFAGSDVTVLGWGHTSF--NGM 305

Query: 146 IKGILINT 153
           +  IL  T
Sbjct: 306 LSHILQKT 313


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 136 GFVNCCGNGIIKGILINT 153
           GFV+  GNG++  I ++T
Sbjct: 63  GFVSAMGNGMVVYIFLST 80


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 225 EKQIATNYLQEAREKIMTRKSCSQILRHTALNGI 258
           E++ A +  Q +RE+   R+   Q+   T L+G+
Sbjct: 104 ERKHAVHKEQLSREQRFLRRRLEQLTNQTGLHGL 137


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 136 GFVNCCGNGIIKGILINT 153
           GFV+  GNG++  I ++T
Sbjct: 29  GFVSVMGNGMVVYIFLST 46


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 74  KDLGITSSGHKYAIHSGH 91
           K+LG T+  H  A H GH
Sbjct: 148 KNLGGTTLHHGMAYHRGH 165



 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 158 KDLGITSSGHKYAIHSGH 175
           K+LG T+  H  A H GH
Sbjct: 148 KNLGGTTLHHGMAYHRGH 165


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,019
Number of Sequences: 429
Number of extensions: 3139
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 271
length of database: 140,377
effective HSP length: 57
effective length of query: 214
effective length of database: 115,924
effective search space: 24807736
effective search space used: 24807736
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)