GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003102-TA|BGIBMGA003102-PA|IPR005331|Chondroitin
4-O-sulfotransferase
         (105 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    20   5.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    19   9.4  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
          protein 9 protein.
          Length = 423

 Score = 20.2 bits (40), Expect = 5.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)

Query: 86 KYDFKIFDYHLDS 98
          KY +K FDY+  S
Sbjct: 35 KYQWKYFDYNFGS 47


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)

Query: 52  NFPRLTSTSGTAQ 64
           N  +LT TSGT Q
Sbjct: 941 NVIKLTKTSGTVQ 953


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.144    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,764
Number of Sequences: 429
Number of extensions: 940
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 105
length of database: 140,377
effective HSP length: 50
effective length of query: 55
effective length of database: 118,927
effective search space:  6540985
effective search space used:  6540985
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.6 bits)
S2: 38 (19.4 bits)