GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003101-TA|BGIBMGA003101-PA|IPR005331|Chondroitin
4-O-sulfotransferase
         (172 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.7  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   6.5  
AY569719-1|AAS86672.1|  401|Apis mellifera complementary sex det...    21   8.6  
AY569718-1|AAS86671.1|  401|Apis mellifera complementary sex det...    21   8.6  
AY569715-1|AAS86668.1|  401|Apis mellifera complementary sex det...    21   8.6  
AY569714-1|AAS86667.1|  401|Apis mellifera complementary sex det...    21   8.6  
AY569713-1|AAS86666.1|  401|Apis mellifera complementary sex det...    21   8.6  
AY569711-1|AAS86664.1|  401|Apis mellifera complementary sex det...    21   8.6  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   8.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 36  QSLNLARQELIQEACRRFSRNYKLDDLQPD 65
           Q LNLAR ++       F RN +L+ ++ D
Sbjct: 505 QILNLARNKVQHVERYAFERNMRLEAIRLD 534


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 85  KVACTNWKRLLLILAGKWNNTDVLSIP 111
           K+A   ++RL ++ +G  NNT  +  P
Sbjct: 131 KIAIDEYERLWVLDSGLVNNTQPMCSP 157


>AY569719-1|AAS86672.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)

Query: 47  QEACRRF-SRNYKLDDLQPDQLRHI 70
           + +C R  SR YK  D + DQL ++
Sbjct: 250 ERSCSRDRSREYKKKDRRYDQLHNV 274


>AY569718-1|AAS86671.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)

Query: 47  QEACRRF-SRNYKLDDLQPDQLRHI 70
           + +C R  SR YK  D + DQL ++
Sbjct: 250 ERSCSRDRSREYKKKDRRYDQLHNV 274


>AY569715-1|AAS86668.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)

Query: 47  QEACRRF-SRNYKLDDLQPDQLRHI 70
           + +C R  SR YK  D + DQL ++
Sbjct: 250 ERSCSRDRSREYKKKDRRYDQLHNV 274


>AY569714-1|AAS86667.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)

Query: 47  QEACRRF-SRNYKLDDLQPDQLRHI 70
           + +C R  SR YK  D + DQL ++
Sbjct: 250 ERSCSRDRSREYKKKDRRYDQLHNV 274


>AY569713-1|AAS86666.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)

Query: 47  QEACRRF-SRNYKLDDLQPDQLRHI 70
           + +C R  SR YK  D + DQL ++
Sbjct: 250 ERSCSRDRSREYKKKDRRYDQLHNV 274


>AY569711-1|AAS86664.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)

Query: 47  QEACRRF-SRNYKLDDLQPDQLRHI 70
           + +C R  SR YK  D + DQL ++
Sbjct: 250 ERSCSRDRSREYKKKDRRYDQLHNV 274


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)

Query: 47  QEACRRF-SRNYKLDDLQPDQLRHI 70
           + +C R  SR YK  D + DQL ++
Sbjct: 250 ERSCSRDRSREYKKKDRRYDQLHNV 274


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.139    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,198
Number of Sequences: 429
Number of extensions: 2246
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 172
length of database: 140,377
effective HSP length: 54
effective length of query: 118
effective length of database: 117,211
effective search space: 13830898
effective search space used: 13830898
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 41 (20.6 bits)