GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003099-TA|BGIBMGA003099-PA|IPR013706|3,5,-cyclic
nucleotide phosphodiesterase N-terminal, IPR002073|3'5'-cyclic
nucleotide phosphodiesterase, IPR003607|Metal-dependent
phosphohydrolase, HD region
         (541 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   1.6  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   3.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   4.9  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   6.4  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 189 IYRRVTSTALMQFPQDVVRVLKTLDEWSFDVFTLH----EAANGQPVKYLGYELLNRYGM 244
           +Y+   S  +  FP DV   +  L  W++D F +     +  +G  V  +G +L   Y  
Sbjct: 148 VYKSSCSIDVEFFPYDVQTCVLKLGSWTYDGFKVDLRHMDEKSGSNVVDVGVDLSEFYMS 207

Query: 245 IH--KFKVPPTILENFLGRIEEGY 266
           +     +VP    E F    +E Y
Sbjct: 208 VEWDILEVPAVRNEKFYTCCDEPY 231


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 115 AKVLEAVYIDETKRLADEDDELSEVQPDAVPPEVREWLASTFTRQLATA-KRKSDEK 170
           AK  E V I   K L +  DE+ EV+ D +  EV ++        LA   K  +D+K
Sbjct: 375 AKPSEVVQILGWKELPNVGDEILEVENDKILQEVIKFRQKQRAEILAKEHKAAADQK 431


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 314 HDYEHTGTTNNFHVMSGSDTALLYNDRAVLE 344
           H Y HT T+ N  V    D  +LY+ R  ++
Sbjct: 97  HSYLHTITSPNKFVRLYQDGRVLYSSRLTIK 127


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 13/51 (25%), Positives = 24/51 (47%)

Query: 101 EISAETLQKNLQYAAKVLEAVYIDETKRLADEDDELSEVQPDAVPPEVREW 151
           E+ AE +   L+   KV+  +     +R A + DE+   Q  A+  ++  W
Sbjct: 106 ELIAEKVAHALESGLKVIACIGEKLEEREAGKTDEVVFRQTKAIANKINSW 156


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,561
Number of Sequences: 429
Number of extensions: 6072
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 4
length of query: 541
length of database: 140,377
effective HSP length: 61
effective length of query: 480
effective length of database: 114,208
effective search space: 54819840
effective search space used: 54819840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)