GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003098-TA|BGIBMGA003098-PA|undefined
         (61 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   0.88 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    19   6.2  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    19   6.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    19   6.2  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 0.88
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 3   NAEARQLFKEISARLIDASGDPRAGTHFGQRLSLANQPGNAASL 46
           N E R+ FK I  +   A G+  + +  G+  S+  Q  N + +
Sbjct: 329 NTEFREAFKRILTKGARARGNQPSTSECGEFRSVVVQKRNGSMI 372


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 18.6 bits (36), Expect = 6.2
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 14  SARLIDASGDPRAGTHFG 31
           S  L    GD  +G H+G
Sbjct: 106 SKHLCSICGDRASGKHYG 123


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 18.6 bits (36), Expect = 6.2
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 14  SARLIDASGDPRAGTHFG 31
           S  L    GD  +G H+G
Sbjct: 106 SKHLCSICGDRASGKHYG 123


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 18.6 bits (36), Expect = 6.2
 Identities = 6/14 (42%), Positives = 11/14 (78%)

Query: 31  GQRLSLANQPGNAA 44
           G+R++  + PG+AA
Sbjct: 192 GERVTFLDTPGHAA 205


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.134    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,180
Number of Sequences: 429
Number of extensions: 362
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 61
length of database: 140,377
effective HSP length: 41
effective length of query: 20
effective length of database: 122,788
effective search space:  2455760
effective search space used:  2455760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
S2: 35 (18.2 bits)