GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003096-TA|BGIBMGA003096-PA|IPR000618|Insect cuticle
protein
         (382 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   2.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   2.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   2.5  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 329  GGPLAH--GAGWAPNAALANGAGWAPNSALPH 358
            GG LA   G G    AA A+ AG  PN+ L H
Sbjct: 1707 GGSLAGLGGLGGLGGAAEASAAGLHPNNTLLH 1738


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced
          protein 75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 47 NVVGKYSLLEADGTKRVVEYSADDATGFKAVVH 79
          N++G+  L E DGT  +     D A+GF   VH
Sbjct: 51 NLLGRV-LAEFDGTTVLCRVCGDKASGFHYGVH 82


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 329  GGPLAH--GAGWAPNAALANGAGWAPNSALPH 358
            GG LA   G G    AA A+ AG  PN+ L H
Sbjct: 1703 GGSLAGLGGLGGLGGAAEASAAGLHPNNTLLH 1734


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.135    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,624
Number of Sequences: 429
Number of extensions: 2538
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 3
length of query: 382
length of database: 140,377
effective HSP length: 59
effective length of query: 323
effective length of database: 115,066
effective search space: 37166318
effective search space used: 37166318
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 45 (22.2 bits)