GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003095-TA|BGIBMGA003095-PA|IPR000618|Insect cuticle
protein
         (151 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    26   0.19 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.44 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   4.1  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
          protein protein.
          Length = 138

 Score = 25.8 bits (54), Expect = 0.19
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 33 SYNVADPSTGDFKSQVETRVGGTVSGQYSLIEPDGTKRTVDYAADDVNGF 82
          S  ++   +G  K QV+        G  S   PDG + ++ Y AD+ NGF
Sbjct: 49 SNGISHQESGQPK-QVDNETPVVSQGSDSYTAPDGQQVSITYVADE-NGF 96


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 0.44
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 49  ETRVGGTVSGQYSLIEPDGTKRTVDYAADDVNGFNAVVRKD 89
           ETR+  T  G+  + EP G+ R    + D++NG +   + D
Sbjct: 190 ETRLSAT-KGRLVITEPVGSVRPKFPSMDNINGLSTESKAD 229


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 59  QYSLIEPDGTKRTVDYAADDVNGFNAVV 86
           QY + +P   + TVDY  +    F+ +V
Sbjct: 163 QYDIGKPVVAEETVDYMLEKSGNFSRLV 190


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.132    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,331
Number of Sequences: 429
Number of extensions: 452
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 151
length of database: 140,377
effective HSP length: 53
effective length of query: 98
effective length of database: 117,640
effective search space: 11528720
effective search space used: 11528720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)
S2: 40 (20.2 bits)