GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003093-TA|BGIBMGA003093-PA|IPR003315|Rabphilin-3A
effector, IPR011011|Zinc finger, FYVE/PHD-type
         (378 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    25   1.1  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   9.9  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   9.9  

>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 199 CKLCKKTVCQKCCSKMRIPTEH 220
           C+LC K +C K   K  +  +H
Sbjct: 8   CQLCGKVLCSKASLKRHVADKH 29


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 12/39 (30%), Positives = 16/39 (41%)

Query: 292 PLSLPPAPLMSRSVDAPADTLYRRSRYSRSPTGAAERLR 330
           P   PP P + R  ++ A+    R  Y   P     RLR
Sbjct: 79  PQPRPPHPRLRREAESEAEPGNNRPVYIPQPRPPHPRLR 117


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
          protein.
          Length = 157

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 8/12 (66%), Positives = 10/12 (83%)

Query: 31 PTTQQTPKPWKR 42
          PTTQ+  KP+KR
Sbjct: 87 PTTQEINKPFKR 98


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.131    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,256
Number of Sequences: 429
Number of extensions: 3053
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 4
length of query: 378
length of database: 140,377
effective HSP length: 59
effective length of query: 319
effective length of database: 115,066
effective search space: 36706054
effective search space used: 36706054
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)