GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003089-TA|BGIBMGA003089-PA|IPR004328|BRO1,
IPR000242|Tyrosine specific protein phosphatase
         (1293 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              29   0.19 
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    28   0.57 
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    28   0.57 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     26   1.7  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              26   2.3  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              26   2.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 29.5 bits (63), Expect = 0.19
 Identities = 10/30 (33%), Positives = 21/30 (70%)

Query: 529 LLAQPLDVLQEKIPSIDNIEGLDRETMSEM 558
           ++ +P+  ++ K PS+DNI GL  E+ +++
Sbjct: 201 VITEPVGSVRPKFPSMDNINGLSTESKADL 230


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 27.9 bits (59), Expect = 0.57
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 168 VDISSEIMRLLQEICLGQAQQ-CILEKSIQD 197
           ++    IMR+L+E+C+ QA + CIL K + D
Sbjct: 23  INSKKTIMRILKEVCVLQANRACILIKDLFD 53


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 27.9 bits (59), Expect = 0.57
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 168 VDISSEIMRLLQEICLGQAQQ-CILEKSIQD 197
           ++    IMR+L+E+C+ QA + CIL K + D
Sbjct: 6   INSKKTIMRILKEVCVLQANRACILIKDLFD 36


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 74  CQLRAMQSRFPMSKGQPA-ACNFTWKDLYASMNCTSASARFELGCIL-YNIGALNTELG 130
           C LR + SR  + +GQPA A    +K+ + + N T        G +  +NI AL  ELG
Sbjct: 82  CSLRKLNSRLFVIRGQPADALPKLFKE-WGTTNLTFEEDPEPFGRVRDHNISALCKELG 139


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 4/58 (6%)

Query: 616 ILEQNLGAQENIINKLTSLYASYGDSRRLLSEVLRKRDGLI----NALVTSYDTYEEL 669
           I++++   +ENI+ +LTS+Y      ++L++E     D  I    N LV  +  Y+ +
Sbjct: 72  IVDESGNFKENIVQELTSIYLDENVIKKLVAECSVISDANIYIRFNKLVKCFGKYKTM 129


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 4/58 (6%)

Query: 616 ILEQNLGAQENIINKLTSLYASYGDSRRLLSEVLRKRDGLI----NALVTSYDTYEEL 669
           I++++   +ENI+ +LTS+Y      ++L++E     D  I    N LV  +  Y+ +
Sbjct: 72  IVDESGNFKENIVQELTSIYLDENVIKKLVAECSVISDANIYIRFNKLVKCFGKYKTM 129


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.131    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 322,413
Number of Sequences: 429
Number of extensions: 13131
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 6
length of query: 1293
length of database: 140,377
effective HSP length: 66
effective length of query: 1227
effective length of database: 112,063
effective search space: 137501301
effective search space used: 137501301
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)