GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003085-TA|BGIBMGA003085-PA|undefined
         (55 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     20   2.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             19   4.8  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    19   6.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    19   6.3  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        19   6.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        19   6.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        19   6.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    19   6.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    18   8.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    18   8.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     18   8.4  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 20.2 bits (40), Expect = 2.1
 Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 5/19 (26%)

Query: 3   RFPELLRRFFGAPVCKWSR 21
           +FP+    FF  P CKWSR
Sbjct: 146 KFPQ---EFF--PECKWSR 159


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.0 bits (37), Expect = 4.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 2   YRFPELLRR 10
           YR PE++RR
Sbjct: 782 YRIPEVMRR 790


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
          channel protein.
          Length = 445

 Score = 18.6 bits (36), Expect = 6.3
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 9  RRFFGAPVCKWSRLAGIEQLQLG 31
          R+F+  P   + +  G+E L +G
Sbjct: 64 RQFWTDPRLAFKKRTGVETLSVG 86


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
          channel protein.
          Length = 445

 Score = 18.6 bits (36), Expect = 6.3
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 9  RRFFGAPVCKWSRLAGIEQLQLG 31
          R+F+  P   + +  G+E L +G
Sbjct: 64 RQFWTDPRLAFKKRTGVETLSVG 86


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 18.6 bits (36), Expect = 6.3
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 8   LRRFFGAPV 16
           ++RFFG PV
Sbjct: 259 VKRFFGLPV 267


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 18.6 bits (36), Expect = 6.3
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 8   LRRFFGAPV 16
           ++RFFG PV
Sbjct: 259 VKRFFGLPV 267


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 18.6 bits (36), Expect = 6.3
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 8   LRRFFGAPV 16
           ++RFFG PV
Sbjct: 259 VKRFFGLPV 267


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
          subunit protein.
          Length = 365

 Score = 18.6 bits (36), Expect = 6.3
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 9  RRFFGAPVCKWSRLAGIEQLQLG 31
          R+F+  P   + +  G+E L +G
Sbjct: 3  RQFWTDPRLAFKKRTGVETLSVG 25


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 18.2 bits (35), Expect = 8.4
 Identities = 5/11 (45%), Positives = 9/11 (81%)

Query: 2   YRFPELLRRFF 12
           +R P+L+R+ F
Sbjct: 328 HRMPQLIRKIF 338


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 18.2 bits (35), Expect = 8.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 24  GIEQLQLGERVGQIDDQALVYE 45
           G+E + L E+V + D Q   +E
Sbjct: 238 GMEMILLCEKVAKEDIQVRFFE 259


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 18.2 bits (35), Expect = 8.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 24  GIEQLQLGERVGQIDDQALVYE 45
           G+E + L E+V + D Q   +E
Sbjct: 238 GMEMILLCEKVAKEDIQVRFFE 259


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.143    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,274
Number of Sequences: 429
Number of extensions: 538
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 55
length of database: 140,377
effective HSP length: 35
effective length of query: 20
effective length of database: 125,362
effective search space:  2507240
effective search space used:  2507240
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.2 bits)
S2: 35 (18.2 bits)