GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003083-TA|BGIBMGA003083-PA|IPR001680|WD-40 repeat,
IPR011046|WD40-like
         (1139 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    27   0.87 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    26   1.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   3.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   6.1  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
            receptor 1 protein.
          Length = 953

 Score = 27.1 bits (57), Expect = 0.87
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 5/74 (6%)

Query: 952  VGPEERWQKIIQKLI-ERT--IAVKKRIN--RAELIEHEKPLRELEAQRLEKERRMLEIM 1006
            VG ++ W  +I +L+ ER   I     IN  RAE IE  KP +      LEK+      +
Sbjct: 498  VGGKKEWTGLIGELVNERADMIVAPLTINPERAEFIEFSKPFKYQGITILEKKPSRSSTL 557

Query: 1007 KNQKTIFNDTVAIL 1020
             +    F++T+ IL
Sbjct: 558  VSFLQPFSNTLWIL 571


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 768 IFAIWSDNLMQRPLFWKKRPYRLTD 792
           IF  W+ N++   L+W + P  L D
Sbjct: 159 IFESWTHNVLDMVLYWDQEPIILAD 183


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 12/47 (25%), Positives = 23/47 (48%)

Query: 968  RTIAVKKRINRAELIEHEKPLRELEAQRLEKERRMLEIMKNQKTIFN 1014
            +T++ K  + R +  +H +PL         K  R L  + N K+I++
Sbjct: 379  KTLSTKLTLKRHKEQQHFQPLNSAVCALCHKVFRTLNSLNNHKSIYH 425


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 11/54 (20%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 348 KMINNFVTKKCEEMDTIVELNTVMDMYCNDYPNLIVQKTTDIYNSM---IFEEY 398
           K ++  + +  + +DT+  +  ++D   ++   L +Q+T D +  +    +EEY
Sbjct: 356 KNLSKVIDQHSQLIDTLENVLAIVDRLMDETNQLTLQETADAFKDLQDKYYEEY 409


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.133    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 302,631
Number of Sequences: 429
Number of extensions: 12833
Number of successful extensions: 37
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 4
length of query: 1139
length of database: 140,377
effective HSP length: 65
effective length of query: 1074
effective length of database: 112,492
effective search space: 120816408
effective search space used: 120816408
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 49 (23.8 bits)