GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003080-TA|BGIBMGA003080-PA|IPR000910|HMG1/2 (high
mobility group) box, IPR009071|High mobility group box
         (89 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    22   1.0  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   1.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   1.3  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    19   7.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               19   9.4  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     19   9.4  

>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 22.2 bits (45), Expect = 1.0
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 30  SLSMNGQPQQKKSQEEHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRL 81
           S++    P+ +    E I   +N      +L+ R+I +D+     S + KR+
Sbjct: 78  SMTFGPVPKFEGEMAEKISNELNEMCPLEKLKERRIWRDDALTKLSLLKKRI 129


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 1.3
 Identities = 10/41 (24%), Positives = 24/41 (58%)

Query: 25  IGTMGSLSMNGQPQQKKSQEEHIKRPMNAFMVWSRLQRRKI 65
           I T  S+ +  + + KKS+++ I+R    F+  ++++  K+
Sbjct: 221 IYTYTSILLEIRRRSKKSEDDKIRRSSIGFLTRAKIRTLKM 261


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 1.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 65  IAQDNPKMHNSEISKRLGN 83
           IA D P + N+E+ +R+ N
Sbjct: 346 IAADRPGLRNTELVERMHN 364


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 32  SMNGQPQQKKSQEEHIKRPMNAFMVWS 58
           ++N QP  K     + K P++  ++WS
Sbjct: 451 ALNVQPTSKGRITLNSKDPLDPPVIWS 477


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 19.0 bits (37), Expect = 9.4
 Identities = 9/22 (40%), Positives = 11/22 (50%)

Query: 23  GAIGTMGSLSMNGQPQQKKSQE 44
           GAIG  G       P++KK  E
Sbjct: 197 GAIGAYGPEKGPKVPEKKKEDE 218


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 19.0 bits (37), Expect = 9.4
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 56  VWSRLQRRKIAQDNPKMHNSEIS 78
           V+S+ +RR +     + HN + S
Sbjct: 197 VYSKTRRRALEHTLDRFHNDKYS 219


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.129    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,290
Number of Sequences: 429
Number of extensions: 833
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 89
length of database: 140,377
effective HSP length: 48
effective length of query: 41
effective length of database: 119,785
effective search space:  4911185
effective search space used:  4911185
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)
S2: 37 (19.0 bits)