GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003074-TA|BGIBMGA003074-PA|IPR002223|Proteinase
inhibitor I2, Kunitz metazoa
         (168 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   0.91 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   1.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   1.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   1.6  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   4.8  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   8.4  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 0.91
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 138 ATSAREAMNATNADSATTIATVVEAA 163
           ATSAR A+  T   + TTI+T V ++
Sbjct: 269 ATSARVALGITTVLTMTTISTGVRSS 294


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 137 NATSAREAMNATNADSATTIATVVEAASNK 166
           NAT AR A+  T   + TT+ +   AA  K
Sbjct: 247 NATPARVALGVTTVLTMTTLMSSTNAALPK 276


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 137 NATSAREAMNATNADSATTIATVVEAASNK 166
           NAT AR A+  T   + TT+ +   AA  K
Sbjct: 247 NATPARVALGVTTVLTMTTLMSSTNAALPK 276


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 137 NATSAREAMNATNADSATTIATVVEAASNK 166
           NAT AR A+  T   + TT+ +   AA  K
Sbjct: 186 NATPARVALGVTTVLTMTTLMSSTNAALPK 215


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 74  ITSCIFSVRAMAHAYHQELNLNEANIMGLEQFKE 107
           + S + S+R     YH++ + NE     +EQ +E
Sbjct: 41  VYSSLNSLRNHKSIYHRQHSKNEQQRKEMEQMRE 74


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 115 GLQETTVAGTDEGNA 129
           GLQ   +AGT +G+A
Sbjct: 332 GLQPPDLAGTSQGSA 346


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.125    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,090
Number of Sequences: 429
Number of extensions: 1485
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 168
length of database: 140,377
effective HSP length: 53
effective length of query: 115
effective length of database: 117,640
effective search space: 13528600
effective search space used: 13528600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 41 (20.6 bits)