GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003073-TA|BGIBMGA003073-PA|IPR001983|Translationally
controlled tumor protein, IPR011057|Mss4-like
         (166 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    23   2.1  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    23   2.1  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    23   2.1  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    23   2.1  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    23   2.1  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   4.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   6.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.3  

>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 10/58 (17%), Positives = 29/58 (50%)

Query: 76  ETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFF 133
           E  ++ ++ SY  Y +   ++   + E +   + ++  +  NK + +    +K+LQ++
Sbjct: 46  EKKSYKNENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQYY 103


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 10/58 (17%), Positives = 29/58 (50%)

Query: 76  ETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFF 133
           E  ++ ++ SY  Y +   ++   + E +   + ++  +  NK + +    +K+LQ++
Sbjct: 46  EKKSYKNENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQYY 103


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 10/58 (17%), Positives = 29/58 (50%)

Query: 76  ETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFF 133
           E  ++ ++ SY  Y +   ++   + E +   + ++  +  NK + +    +K+LQ++
Sbjct: 46  EKKSYKNENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQYY 103


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 10/58 (17%), Positives = 29/58 (50%)

Query: 76  ETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFF 133
           E  ++ ++ SY  Y +   ++   + E +   + ++  +  NK + +    +K+LQ++
Sbjct: 46  EKKSYKNENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQYY 103


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 10/58 (17%), Positives = 29/58 (50%)

Query: 76  ETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFF 133
           E  ++ ++ SY  Y +   ++   + E +   + ++  +  NK + +    +K+LQ++
Sbjct: 279 EKKSYKNENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQYY 336


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
          protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 12/39 (30%), Positives = 26/39 (66%), Gaps = 3/39 (7%)

Query: 54 ADEGTDSAVESG-VDIVLNHRLVETYAFGDKKSYTLYLK 91
          +DE   +A++SG  +  +N+ L++T  +GD K++ + +K
Sbjct: 44 SDEKRQAAIQSGDYNYTMNY-LLDTDQWGD-KTFVIIMK 80


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 80  FGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEV 111
           FG KK+  L++K +    V      +P + E+
Sbjct: 269 FGSKKTMELHIKTHSDSSVVGSPRDSPIEPEI 300


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 41   DIQIEGFNPSAEEADEGTDSAVESG 65
            D+++EGF       D  T S  +SG
Sbjct: 1050 DLEVEGFETKLVLEDGITSSGSDSG 1074


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,099
Number of Sequences: 429
Number of extensions: 1634
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 166
length of database: 140,377
effective HSP length: 53
effective length of query: 113
effective length of database: 117,640
effective search space: 13293320
effective search space used: 13293320
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)