GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003065-TA|BGIBMGA003065-PA|IPR000618|Insect cuticle
protein
         (203 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    25   0.38 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.66 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   6.2  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
          protein protein.
          Length = 138

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 50 QVETRVGGTVSGQYSLIEPDGTKRTVDYAADDVNGF 85
          QV+        G  S   PDG + ++ Y AD+ NGF
Sbjct: 62 QVDNETPVVSQGSDSYTAPDGQQVSITYVADE-NGF 96


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 0.66
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 52  ETRVGGTVSGQYSLIEPDGTKRTVDYAADDVNGFNAVVRKD 92
           ETR+  T  G+  + EP G+ R    + D++NG +   + D
Sbjct: 190 ETRLSAT-KGRLVITEPVGSVRPKFPSMDNINGLSTESKAD 229


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 62  QYSLIEPDGTKRTVDYAADDVNGFNAVV 89
           QY + +P   + TVDY  +    F+ +V
Sbjct: 163 QYDIGKPVVAEETVDYMLEKSGNFSRLV 190


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.131    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,273
Number of Sequences: 429
Number of extensions: 634
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 3
length of query: 203
length of database: 140,377
effective HSP length: 55
effective length of query: 148
effective length of database: 116,782
effective search space: 17283736
effective search space used: 17283736
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)