GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003052-TA|BGIBMGA003052-PA|IPR008928|Six-hairpin
glycosidase, IPR005195|Glycoside hydrolase family 65, central
catalytic
         (685 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    27   0.51 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            26   0.89 

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 27.1 bits (57), Expect = 0.51
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 306 PSEDSHQPLGRFYGLSPTGLARGGTLEDYEGHNFWDTEIW 345
           P+E+S QPL   +GLS   +            N W T+IW
Sbjct: 23  PAENSSQPLAVVFGLSLHHIIDVDEKNQILTTNCWVTQIW 62


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 26.2 bits (55), Expect = 0.89
 Identities = 10/37 (27%), Positives = 20/37 (54%)

Query: 38  PKVFSTFRLPTNDRFMASIGNGHVAANVFSDTVYMNG 74
           P++ S+F   + D+   + GNG++ +    D +  NG
Sbjct: 341 PRIMSSFDFQSKDQGPPNDGNGNILSPSIHDNICSNG 377


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.134    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,106
Number of Sequences: 429
Number of extensions: 8983
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 2
length of query: 685
length of database: 140,377
effective HSP length: 62
effective length of query: 623
effective length of database: 113,779
effective search space: 70884317
effective search space used: 70884317
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)