GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003049-TA|BGIBMGA003049-PA|IPR002048|Calcium-binding
EF-hand, IPR000447|FAD-dependent glycerol-3-phosphate dehydrogenase,
IPR006076|FAD dependent oxidoreductase
         (754 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            26   1.3  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    24   4.0  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   9.2  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 209 CGGIVYYDGQQDDARMNLAIALTAARHGATIANHV 243
           C G V ++G Q D + NL + L   ++   I+ ++
Sbjct: 419 CSGFVAFNGDQYDLKKNLKVCLPPGQYCDVISGNL 453


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 441 AVESANLKPIFRDSQTDGFLIEGA 464
           +V + N K + ++   DGFL+ GA
Sbjct: 210 SVTAGNAKDLAKEKDIDGFLVGGA 233


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 74  GATGVGCALDATTRGLRTALV 94
           G TG+G A+ A  RG +  +V
Sbjct: 107 GNTGIGLAMAAAVRGYKCIIV 127


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,374
Number of Sequences: 429
Number of extensions: 8671
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 3
length of query: 754
length of database: 140,377
effective HSP length: 63
effective length of query: 691
effective length of database: 113,350
effective search space: 78324850
effective search space used: 78324850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)