GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003048-TA|BGIBMGA003048-PA|IPR009582|Microsomal signal
peptidase 25 kDa subunit
         (184 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   5.4  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   9.5  

>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 7/15 (46%), Positives = 12/15 (80%)

Query: 106 KEKVGNNTRVWEASS 120
           +E+ G+N  VWEA++
Sbjct: 24  EEETGSNLPVWEAAA 38


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 9   KINKWDGAAAKNAVDDAIREVMTGDLK 35
           +IN  D    +N  D  ++ ++TGD K
Sbjct: 129 RINSCDLLKKRNENDPFLKRLITGDEK 155


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.133    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,488
Number of Sequences: 429
Number of extensions: 1871
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 184
length of database: 140,377
effective HSP length: 54
effective length of query: 130
effective length of database: 117,211
effective search space: 15237430
effective search space used: 15237430
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)