GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003045-TA|BGIBMGA003045-PA|IPR008918|Helix-hairpin-helix
motif, class 2, IPR006085|XPG N-terminal, IPR006086|XPG I,
IPR001044|Xeroderma pigmentosum group G protein, IPR006084|DNA repair
protein (XPGC)/yeast Rad
         (1115 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   2.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   4.5  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 8/23 (34%), Positives = 17/23 (73%)

Query: 308 SNRVEEINIEKEKSPVKDELECD 330
           S++VE   + +E SP++D ++C+
Sbjct: 221 SSKVEGNGVHEENSPLEDNIKCE 243


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 248 MSLKDLESLLNEEGIDTNVDTLPTKRIASNDNTRFLLI--NNIKQALAEAKQRNDAKDQA 305
           + L++L +L   E +++NV  LP   + S DN + L +  N ++        R D+ D  
Sbjct: 144 LGLRELHTL---EIVESNVQALPVNSLCSLDNLQTLNLTENRLRDINDIGLNRRDS-DDG 199

Query: 306 STSNRVEE 313
           S  N  +E
Sbjct: 200 SDGNDGDE 207


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.130    0.352 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 266,147
Number of Sequences: 429
Number of extensions: 11036
Number of successful extensions: 26
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 5
length of query: 1115
length of database: 140,377
effective HSP length: 65
effective length of query: 1050
effective length of database: 112,492
effective search space: 118116600
effective search space used: 118116600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 49 (23.8 bits)