GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003044-TA|BGIBMGA003044-PA|IPR001609|Myosin head, motor
region, IPR001452|Src homology-3, IPR000048|IQ calmodulin-binding
region, IPR000857|Unconventional myosin/plant kinesin-like
protein/non-motor protein conserved region MyTH4, IPR011511|Variant
SH3, IPR000299|Band 4.1
         (2079 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   8.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    25   8.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   8.5  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 198 YCLLAGLSKDDKKKLELGDPSEYRYLSAGGSFSCE--GRDDAAEFADIRSAMKVLLFTES 255
           Y +L    K+ ++K+ +GD S+ +  SAG S   +  G +  +E   ++SA+   + T  
Sbjct: 761 YIILFQPDKNIRRKVTMGDKSKKQGSSAGTSSITKYTGCELTSESMPLQSALTAAVQTSV 820

Query: 256 EIWEI 260
            + EI
Sbjct: 821 GVTEI 825


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase protein.
          Length = 693

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 1950 YNQDAGMTPEDAKITFLKVIYRWPTFGSAFFEVKQTTEPNY--PELLLIAINKHGVSLIH 2007
            Y +  G+  + A      + YRW  F    F+  + T P Y   +L    I    + L  
Sbjct: 382  YLESFGVMGDSATAMRDPIFYRWHAFVDDVFQEHKNTLPQYTVQQLDFPGIEIADIKLTT 441

Query: 2008 PQTKDILVT 2016
             Q ++IL T
Sbjct: 442  NQQRNILNT 450


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 198 YCLLAGLSKDDKKKLELGDPSEYRYLSAGGSFSCE--GRDDAAEFADIRSAMKVLLFTES 255
           Y +L    K+ ++K+ +GD S+ +  SAG S   +  G +  +E   ++SA+   + T  
Sbjct: 851 YIILFQPDKNIRRKVTMGDKSKKQGSSAGTSSITKYTGCELTSESMPLQSALTAAVQTSV 910

Query: 256 EIWEI 260
            + EI
Sbjct: 911 GVTEI 915


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.136    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 570,070
Number of Sequences: 429
Number of extensions: 24630
Number of successful extensions: 37
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 37
Number of HSP's gapped (non-prelim): 3
length of query: 2079
length of database: 140,377
effective HSP length: 69
effective length of query: 2010
effective length of database: 110,776
effective search space: 222659760
effective search space used: 222659760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)