GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003040-TA|BGIBMGA003040-PA|IPR011526|Helix-turn-helix,
Psq-like, IPR007889|Helix-turn-helix, Psq, IPR009057|Homeodomain-like
         (158 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             42   2e-06
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          41   5e-06
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 42.3 bits (95), Expect = 2e-06
 Identities = 18/49 (36%), Positives = 33/49 (67%)

Query: 3   GRQSWNEEDMAKAVAAVVSGKMGYKLASRTYHIPRSTLQRRASKIRYQQ 51
           GR+++ EE++  A+  + SGK+G + A+  Y IPRSTL+ +  K+  ++
Sbjct: 587 GRRAYTEEELQAALRDIQSGKLGTRRAAVIYGIPRSTLRNKVYKLAMER 635



 Score = 30.7 bits (66), Expect = 0.007
 Identities = 13/48 (27%), Positives = 26/48 (54%)

Query: 5    QSWNEEDMAKAVAAVVSGKMGYKLASRTYHIPRSTLQRRASKIRYQQP 52
            ++++ + + +AV AV  G+M    A   Y +P STL+ +  +    +P
Sbjct: 1041 RNYDRDSLVEAVRAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMRP 1088


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 41.1 bits (92), Expect = 5e-06
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 3   GRQSWNEEDMAKAVAAVVSGKMGYKLASRTYHIPRSTLQRRASKIRYQQPDEPKP 57
           G +SW +EDM  A+ A+ +  M    AS T+ IP +TL +RA ++    P +  P
Sbjct: 407 GSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGP 461



 Score = 33.1 bits (72), Expect = 0.001
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 5   QSWNEEDMAKAVAAVVSGKMGYKLASRTYHIPRSTLQR--RASKIRYQQPDEPKP 57
           +SW++E +  A+ A+ +G +    AS+ + IP STL +  R   IR   P    P
Sbjct: 463 KSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASP 517



 Score = 30.3 bits (65), Expect = 0.010
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 6   SWNEEDMAKAVAAVVSGKMGYKLASRTYHIPRSTLQRRASK 46
           +W+  D+ +A+ A+ SG+   + AS  + IP  TL  R  +
Sbjct: 519 TWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKR 559


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 108 HPFDVNSRMAGEDWVRNFLKRNPE 131
           HP D ++R+  + W   F K + E
Sbjct: 574 HPSDRSARLMLQPWANVFAKGDME 597


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.134    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,163
Number of Sequences: 429
Number of extensions: 1921
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 158
length of database: 140,377
effective HSP length: 53
effective length of query: 105
effective length of database: 117,640
effective search space: 12352200
effective search space used: 12352200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)