GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003033-TA|BGIBMGA003033-PA|IPR001962|Asparagine
synthase, IPR001164|Arf GTPase activating protein
         (489 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          27   0.47 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   4.4  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 26.6 bits (56), Expect = 0.47
 Identities = 13/42 (30%), Positives = 19/42 (45%)

Query: 385 TTGTDVSQRISRPSSTATSTLNNIFNTSSSTGKENNGISNKN 426
           T G  V +   R S+ +T T  N    +S+    NN  +N N
Sbjct: 210 TAGAVVLETCQRNSNNSTITAGNANTNASNNNNNNNNNNNNN 251


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 254 RGLTPPHRVKSISMATFTPEEIEFIKSRGNDYCRLVWLGLYDGESINFT 302
           +GL PP+R+    M+  T  E+     +  +Y     +G  + E IN T
Sbjct: 488 QGLPPPYRLNKPLMSLITSSEVR-QPGKAPNYSVNWTIGQLEAEVINCT 535


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,324
Number of Sequences: 429
Number of extensions: 6145
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 2
length of query: 489
length of database: 140,377
effective HSP length: 60
effective length of query: 429
effective length of database: 114,637
effective search space: 49179273
effective search space used: 49179273
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)