GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003032-TA|BGIBMGA003032-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal,
IPR011074|Phosphatidylinositol transfer protein-like, N-terminal,
IPR001071|Cellular retinaldehyde binding/alpha-tocopherol transport
         (301 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   3.3  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   4.4  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)

Query: 153 FKGCVLFLEAAMLE 166
           F GC +FL AAM+E
Sbjct: 298 FLGCTIFLFAAMVE 311


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 12/30 (40%), Positives = 14/30 (46%)

Query: 138 LGKKWKHNKCSLDEVFKGCVLFLEAAMLEP 167
           LGK+WK N    D V K  +   E    EP
Sbjct: 90  LGKEWKKNLNLRDSVTKYLIHLKEIEDTEP 119


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.143    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,830
Number of Sequences: 429
Number of extensions: 4064
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 301
length of database: 140,377
effective HSP length: 57
effective length of query: 244
effective length of database: 115,924
effective search space: 28285456
effective search space used: 28285456
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 44 (21.8 bits)