GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003030-TA|BGIBMGA003030-PA|undefined
         (224 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   0.76 
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   1.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.1  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 32/156 (20%), Positives = 60/156 (38%), Gaps = 9/156 (5%)

Query: 68  GYHNPRILADKSKSSTVVPQQASIAASTGPSQPTHRASWPYGTHLHCLIAQHSSSVSTHR 127
           G+ +P +   +S S++      ++   TG  + +H +  P    L   +   SSS +T  
Sbjct: 274 GHGSPPVKQHRSSSASTTCSGHTVRCFTGGPRKSHESQCPMLQKLEKPVL--SSSTTTTS 331

Query: 128 RLRAAISARTTITKMTRPPVSEGSDVADKAHIYKFRTTTFGPSVYRAISPARWKIFPLSY 187
            +    S ++TI    R  ++    V +  H  K R                   F + +
Sbjct: 332 PMT---STKSTIV---RNHLNSTCSVTNSPHQKKLRFHLAKERKASTTLGIIMSAFIVCW 385

Query: 188 IPTVSKSPPRGNHKSPPK-PLHNAAIFFWVSYCPPL 222
           +P    +  R   K+P   P   +++F W+ YC  L
Sbjct: 386 LPFFVLALVRPFLKNPDAIPAFLSSLFLWLGYCNSL 421


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 86  PQQASIAASTGPSQPTHRASWPY 108
           PQ +  +AST P+  T  + +PY
Sbjct: 69  PQHSGSSASTSPAARTTSSMYPY 91


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 181 KIFPLSYIPTVSKSPPRGN 199
           ++ PLS IP  SK+P  G+
Sbjct: 366 EVIPLSAIPEPSKNPAMGH 384


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 71  NPRILADKSKSSTVVPQQASIAASTGPSQ 99
           NPRI +  S S++  P     AA+  PS+
Sbjct: 514 NPRIASAPSSSTSSSPPAKGAAAAGQPSK 542


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 8   HFQDKAHIYKFRTTTFGPAVYRAI 31
           HF+  A   KF +  FG A+ R I
Sbjct: 445 HFKQIARAVKFTSKLFGRALSRRI 468


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query: 101 THRASWPYGTH 111
           T  +SWPY TH
Sbjct: 171 TDFSSWPYDTH 181


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.133    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,687
Number of Sequences: 429
Number of extensions: 3644
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 6
length of query: 224
length of database: 140,377
effective HSP length: 55
effective length of query: 169
effective length of database: 116,782
effective search space: 19736158
effective search space used: 19736158
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)