GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003029-TA|BGIBMGA003029-PA|IPR001680|WD-40 repeat,
IPR011046|WD40-like, IPR000409|Beige/BEACH
         (810 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    29   0.11 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    28   0.35 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    28   0.35 
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    27   0.61 
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    24   4.3  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   7.5  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   7.5  

>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 29.5 bits (63), Expect = 0.11
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 637 TGQALRGLKMEFDHDGKITCLTHRRRRHEVDVITGTSDGELFIWSMNNKGLIAKFSAHPS 696
           +G+ L  LK EF  +  +T     RRR ++    G ++ ++ IW  N +  I K S   +
Sbjct: 28  SGEQLARLKREFAENRYLT----ERRRQQLSRDLGLNEAQIKIWFQNKRAKIKKASGQKN 83

Query: 697 EI 698
            +
Sbjct: 84  PL 85


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 27.9 bits (59), Expect = 0.35
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 623 GCDGVVRVWGNIGKTGQALRGLKMEFDHDGKITC 656
           GCD V  V+G+I   GQA+    + FD    I+C
Sbjct: 128 GCD-VYSVFGSISGMGQAMTNAAIAFDRYRTISC 160


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 27.9 bits (59), Expect = 0.35
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 623 GCDGVVRVWGNIGKTGQALRGLKMEFDHDGKITC 656
           GCD V  V+G+I   GQA+    + FD    I+C
Sbjct: 128 GCD-VYSVFGSISGMGQAMTNAAIAFDRYRTISC 160


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 27.1 bits (57), Expect = 0.61
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 637 TGQALRGLKMEFDHDGKITCLTHRRRRHEVDVITGTSDGELFIWSMNNKGLIAKFSAHPS 696
           + + L  LK EF  +  +T     RRR ++    G ++ ++ IW  N +  I K S   +
Sbjct: 28  SAEQLARLKREFAENRYLT----ERRRQQLSRDLGLTEAQIKIWFQNKRAKIKKASGQKN 83

Query: 697 EI 698
            +
Sbjct: 84  PL 85


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 556 PQIAKPMCCEMNRSYRIECIDVIRLHKESV 585
           P +  P  C+M+ S  + C D  RL+K +V
Sbjct: 51  PNVINPFFCDMSPSLSLLCADT-RLNKLAV 79


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 242 PHIYLTFENEYER-NRIYQILEESPHVSLE-KVHVEEMTLQWQNGVVSNYDYLTYLNCMA 299
           PH+ LTFEN     N +Y +  +   + ++       + L+ Q   +   D +T+L   +
Sbjct: 257 PHLELTFENILSHINTVYVLRTKKGVMRVDASEEYSYLRLKGQMLYIPESDLVTFLCYPS 316

Query: 300 DRSKNDLTQYPVF 312
             + +DLT+  ++
Sbjct: 317 VMNLDDLTRRSLY 329


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 242 PHIYLTFENEYER-NRIYQILEESPHVSLE-KVHVEEMTLQWQNGVVSNYDYLTYLNCMA 299
           PH+ LTFEN     N +Y +  +   + ++       + L+ Q   +   D +T+L   +
Sbjct: 257 PHLELTFENILSHINTVYVLRTKKGVMRVDASEEYSYLRLKGQMLYIPESDLVTFLCYPS 316

Query: 300 DRSKNDLTQYPVF 312
             + +DLT+  ++
Sbjct: 317 VMNLDDLTRRSLY 329


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.138    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 248,240
Number of Sequences: 429
Number of extensions: 11072
Number of successful extensions: 25
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 7
length of query: 810
length of database: 140,377
effective HSP length: 63
effective length of query: 747
effective length of database: 113,350
effective search space: 84672450
effective search space used: 84672450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 47 (23.0 bits)