GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003025-TA|BGIBMGA003025-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR009003|Peptidase, trypsin-like serine and
cysteine, IPR001314|Peptidase S1A, chymotrypsin
         (195 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    77   8e-17
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   1.9  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           23   1.9  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   1.9  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   5.9  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   5.9  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        21   5.9  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 77.4 bits (182), Expect = 8e-17
 Identities = 55/201 (27%), Positives = 97/201 (48%), Gaps = 16/201 (7%)

Query: 4   KVVGGKSGSLEQFPFQAQV---YNLGAICAGTILNSWTILTVAHCFDHNKNVRELEVQTG 60
           ++VGG +  + +FP  A +   Y  G IC  TI++   +LT AHC   ++N  +L +  G
Sbjct: 160 RIVGGTNTGINEFPMMAGIKRTYEPGMICGATIISKRYVLTAAHCI-IDENTTKLAIVVG 218

Query: 61  SKYLYGFKAKK-----YNVSSLVVHKAYNTTAQFS---NDIALIFLTSPVEFGKLVQKGI 112
            ++ +  K +      ++++ +++H  Y+   +     NDIAL+     ++FG  V    
Sbjct: 219 -EHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPAC 277

Query: 113 LVDNGKWMSKYEKNFIVSGWGWTQYGGPISQRGLLTTHLGYVPSRQCGRFHNLSLTPDMF 172
           L       S    +  V GWG T + G +S   L  T L  +   +C +++  ++  +  
Sbjct: 278 LPFQHFLDSFAGSDVTVLGWGHTSFNGMLSHI-LQKTTLNMLTQVECYKYYG-NIMVNAM 335

Query: 173 CLYGDGERDTCKGDSGTGVLW 193
           C Y  G +D C+ DSG  VLW
Sbjct: 336 CAYAKG-KDACQMDSGGPVLW 355


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 17  PFQAQVYNLGAICAGTILNSWT 38
           P  A ++  G   +GT LN WT
Sbjct: 222 PLSAGLFQGGISISGTALNCWT 243


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 17  PFQAQVYNLGAICAGTILNSWT 38
           P  A ++  G   +GT LN WT
Sbjct: 93  PLSAGLFQGGISISGTALNCWT 114


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 17  PFQAQVYNLGAICAGTILNSWT 38
           P  A ++  G   +GT LN WT
Sbjct: 222 PLSAGLFQGGISISGTALNCWT 243


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 68  KAKKYNVSSLVVHKAYNTTAQ 88
           +AKK NV+SL   +  NT+A+
Sbjct: 253 QAKKMNVASLRSSENQNTSAE 273


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 68  KAKKYNVSSLVVHKAYNTTAQ 88
           +AKK NV+SL   +  NT+A+
Sbjct: 129 QAKKMNVASLRSSENQNTSAE 149


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 68 KAKKYNVSSLVVHKAYNTTAQ 88
          +AKK NV+SL   +  NT+A+
Sbjct: 3  QAKKMNVASLRSSENQNTSAE 23


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.137    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,485
Number of Sequences: 429
Number of extensions: 2533
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 195
length of database: 140,377
effective HSP length: 54
effective length of query: 141
effective length of database: 117,211
effective search space: 16526751
effective search space used: 16526751
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)