GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003019-TA|BGIBMGA003019-PA|undefined
         (82 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   0.65 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    19   6.1  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    19   8.0  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 0.65
 Identities = 13/46 (28%), Positives = 16/46 (34%), Gaps = 5/46 (10%)

Query: 27  GHELTRHTPAHVSAHAL-----HPVPDATQRYLLTVSVNQQRQHSP 67
           GH     TP H  +HA      H  P A   Y   + +     H P
Sbjct: 422 GHSHIHATPHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHHHP 467


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 19.4 bits (38), Expect = 6.1
 Identities = 6/16 (37%), Positives = 11/16 (68%)

Query: 64  QHSPLQKYNTNLQASS 79
           +H PLQ+ N ++ A +
Sbjct: 333 EHQPLQRQNMDMVAQN 348


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 6/16 (37%), Positives = 11/16 (68%)

Query: 64  QHSPLQKYNTNLQASS 79
           +H PLQ+ N ++ A +
Sbjct: 333 EHQPLQRENMDMVAQN 348


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.128    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,538
Number of Sequences: 429
Number of extensions: 516
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 82
length of database: 140,377
effective HSP length: 47
effective length of query: 35
effective length of database: 120,214
effective search space:  4207490
effective search space used:  4207490
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.8 bits)
S2: 37 (19.0 bits)