GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003018-TA|BGIBMGA003018-PA|IPR007121|RNA polymerase,
beta subunit, IPR007644|RNA polymerase beta subunit, IPR007642|RNA
polymerase Rpb2, domain 2, IPR007645|RNA polymerase Rpb2, domain 3,
IPR007646|RNA polymerase Rpb2, domain 4, IPR007647|RNA polymerase
Rpb2, domain 5, IPR007120|RNA polymerase Rpb2, domain 6, IPR007641|RNA
polymerase Rpb2, domain 7
         (1148 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    26   1.5  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 381 KNLLKEVRM-YAQKFIDR--GKDFNLELAIKTKIITDGLRYSLATGNWGDQ 428
           +NL   +++ Y  K+ID   G D   + AI++      + Y L T  WGD+
Sbjct: 23  RNLTNSLKVIYEWKYIDYDFGSDEKRQAAIQSGDYNYTMNYLLDTDQWGDK 73


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.137    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 310,870
Number of Sequences: 429
Number of extensions: 13588
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 1
length of query: 1148
length of database: 140,377
effective HSP length: 65
effective length of query: 1083
effective length of database: 112,492
effective search space: 121828836
effective search space used: 121828836
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 49 (23.8 bits)