GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003017-TA|BGIBMGA003017-PA|IPR004245|Protein of unknown
function DUF229, IPR009688|Protein of unknown function DUF1279
         (662 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.37 
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    27   0.49 

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 27.5 bits (58), Expect = 0.37
 Identities = 16/57 (28%), Positives = 26/57 (45%)

Query: 482 PLLDFQQVSFSVTRPCTSMNDQEKPKREEEKKVGLIQRFKEMYRDYCGVDVISILES 538
           PL+  Q    S T     ++   KPK  ++  + L+++ K   R   G+D  SI  S
Sbjct: 495 PLVGVQPHQDSATPADQPLDLSAKPKNSQDNNISLLEQQKIPLRMTAGIDPKSIFNS 551


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 27.1 bits (57), Expect = 0.49
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 622 RLHESKQHYQAQIQEKRTHMMDEMRRYKAEMREMKNKV 659
           R H+S  H Q    E++   M++MR  + E RE  ++V
Sbjct: 49  RNHKSIYHRQHSKNEQQRKEMEQMREREREQREHSDRV 86



 Score = 23.8 bits (49), Expect = 4.6
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 348 EDYLNLMKKI-EFIGSLRNTVIIFFSDHGKRWGKFVETKQGRLEER 392
           E   N+ K++   + SLRN   I+   H K   +  E +Q R  ER
Sbjct: 32  EPICNICKRVYSSLNSLRNHKSIYHRQHSKNEQQRKEMEQMRERER 77


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.138    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,503
Number of Sequences: 429
Number of extensions: 8321
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 3
length of query: 662
length of database: 140,377
effective HSP length: 62
effective length of query: 600
effective length of database: 113,779
effective search space: 68267400
effective search space used: 68267400
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 47 (23.0 bits)