GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003015-TA|BGIBMGA003015-PA|IPR011046|WD40-like,
IPR001680|WD-40 repeat, IPR006162|Phosphopantetheine attachment site
         (915 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   2.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   2.1  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    24   4.9  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    24   6.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   6.4  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   8.5  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 249  GSGLLTIGVGWGGLPRAEQAGVIGIWVGGTLTHRLVGH 286
            G  L  +G G GGL  A +A   G+    TL H  + H
Sbjct: 1707 GGSLAGLG-GLGGLGGAAEASAAGLHPNNTLLHSFMYH 1743


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 249  GSGLLTIGVGWGGLPRAEQAGVIGIWVGGTLTHRLVGH 286
            G  L  +G G GGL  A +A   G+    TL H  + H
Sbjct: 1703 GGSLAGLG-GLGGLGGAAEASAAGLHPNNTLLHSFMYH 1739


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 11/39 (28%), Positives = 15/39 (38%)

Query: 222 FDINNARRPENVIMTNFPVWRAIYTPFGSGLLTIGVGWG 260
           +D+     PE    +N PVW A       G L +    G
Sbjct: 15  YDMTGCGPPEEETGSNLPVWEAAAASLTLGFLVLATVLG 53


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 9/17 (52%), Positives = 14/17 (82%)

Query: 108 TRVVSDTHFHRQDHNLI 124
           TRVV+DT  +R D+N++
Sbjct: 250 TRVVTDTIKYRNDNNIV 266


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 13/38 (34%), Positives = 16/38 (42%)

Query: 203 SPHHEYQLVTSSHDGSIKYFDINNARRPENVIMTNFPV 240
           SPHHEY    SS +    Y  +N     E    +  PV
Sbjct: 524 SPHHEYYDSKSSTETPPSYNQLNYNENIERFFKSKPPV 561


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 448 QSINRTAYRKKKEGHRCLLHCLKTLAKSIDEIP 480
           +++  +  R    G R  L   KTL  S DE+P
Sbjct: 30  RNVEASGQRSVSSGFRSSLRNYKTLISSHDELP 62


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.131    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,857
Number of Sequences: 429
Number of extensions: 10779
Number of successful extensions: 24
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 6
length of query: 915
length of database: 140,377
effective HSP length: 64
effective length of query: 851
effective length of database: 112,921
effective search space: 96095771
effective search space used: 96095771
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)