SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003010-TA|BGIBMGA003010-PA|IPR008921|DNA polymerase III
clamp loader subunit, C-terminal
         (278 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC018923-1|AAH18923.1|  640|Homo sapiens Werner helicase interac...   268   1e-71
AL139092-4|CAH73665.1|  445|Homo sapiens Werner helicase interac...   268   1e-71
AL139092-3|CAH73664.1|  665|Homo sapiens Werner helicase interac...   268   1e-71
AL139092-2|CAH73663.1|  640|Homo sapiens Werner helicase interac...   268   1e-71
AF218313-1|AAF80563.1|  445|Homo sapiens putative helicase RUVBL...   268   1e-71
AB209723-1|BAD92960.1|  646|Homo sapiens Werner helicase interac...   268   1e-71
AK223593-1|BAD97313.1|  665|Homo sapiens Werner helicase interac...   266   8e-71
AB056152-1|BAB60709.1|  665|Homo sapiens Werner helicase interac...   265   1e-70
AL139092-5|CAH73666.1|  281|Homo sapiens Werner helicase interac...   264   3e-70
AK026179-1|BAB15383.1|  281|Homo sapiens protein ( Homo sapiens ...   261   2e-69

>BC018923-1|AAH18923.1|  640|Homo sapiens Werner helicase
           interacting protein 1 protein.
          Length = 640

 Score =  268 bits (657), Expect = 1e-71
 Identities = 135/286 (47%), Positives = 184/286 (64%), Gaps = 13/286 (4%)

Query: 1   MDKLTTEDVMVILKKAVEYNEAKLINTKETVNKSDEPDQTI--PRYLIEEASLQWLAEMC 58
           ++KL  E ++ IL +A+      ++++    +       +   P   IE+ ++  LA + 
Sbjct: 352 LEKLPVEAMVTILMRAINSLGIHVLDSSRPTDPLSHSSNSSSEPAMFIEDKAVDTLAYLS 411

Query: 59  DGDARVALSALELALNAR--------DPGSDVHLNGPAVLTHDDIKDGIKRSHVVYDKHG 110
           DGDAR  L+ L+LA+ AR              +     ++T +D+K+G++RSH++YD+ G
Sbjct: 412 DGDARAGLNGLQLAVLARLSSRKMFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAG 471

Query: 111 EEHYNTISAIQKCIRAGDDNAALYWTARAMHGGEDPLYIARRFVRMACEDIGLADQSALV 170
           EEHYN ISA+ K +R  D NA+LYW AR + GGEDPLY+ARR VR A EDIGLAD SAL 
Sbjct: 472 EEHYNCISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALT 531

Query: 171 EAVACFQGCHQIGMPECDVLLAQCAVRLARAPKSREVYNALKRCQQSLKETKGPLPPVPL 230
           +AVA +QGCH IGMPEC+VLLAQC V  ARAPKS EVY+A    +  L+  +GPLPPVPL
Sbjct: 532 QAVAAYQGCHFIGMPECEVLLAQCVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPL 591

Query: 231 HLRNAPTKLMKQIGYGSG--YNLLSKEESGLTYLPAGVEG-DYFQK 273
           HLRNAPT+LMK +GYG G  YN +  E     YLP  + G D+F++
Sbjct: 592 HLRNAPTRLMKDLGYGKGYKYNPMYSEPVDQEYLPEELRGVDFFKQ 637


>AL139092-4|CAH73665.1|  445|Homo sapiens Werner helicase
           interacting protein 1 protein.
          Length = 445

 Score =  268 bits (657), Expect = 1e-71
 Identities = 135/286 (47%), Positives = 184/286 (64%), Gaps = 13/286 (4%)

Query: 1   MDKLTTEDVMVILKKAVEYNEAKLINTKETVNKSDEPDQTI--PRYLIEEASLQWLAEMC 58
           ++KL  E ++ IL +A+      ++++    +       +   P   IE+ ++  LA + 
Sbjct: 157 LEKLPVEAMVTILMRAINSLGIHVLDSSRPTDPLSHSSNSSSEPAMFIEDKAVDTLAYLS 216

Query: 59  DGDARVALSALELALNAR--------DPGSDVHLNGPAVLTHDDIKDGIKRSHVVYDKHG 110
           DGDAR  L+ L+LA+ AR              +     ++T +D+K+G++RSH++YD+ G
Sbjct: 217 DGDARAGLNGLQLAVLARLSSRKMFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAG 276

Query: 111 EEHYNTISAIQKCIRAGDDNAALYWTARAMHGGEDPLYIARRFVRMACEDIGLADQSALV 170
           EEHYN ISA+ K +R  D NA+LYW AR + GGEDPLY+ARR VR A EDIGLAD SAL 
Sbjct: 277 EEHYNCISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALT 336

Query: 171 EAVACFQGCHQIGMPECDVLLAQCAVRLARAPKSREVYNALKRCQQSLKETKGPLPPVPL 230
           +AVA +QGCH IGMPEC+VLLAQC V  ARAPKS EVY+A    +  L+  +GPLPPVPL
Sbjct: 337 QAVAAYQGCHFIGMPECEVLLAQCVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPL 396

Query: 231 HLRNAPTKLMKQIGYGSG--YNLLSKEESGLTYLPAGVEG-DYFQK 273
           HLRNAPT+LMK +GYG G  YN +  E     YLP  + G D+F++
Sbjct: 397 HLRNAPTRLMKDLGYGKGYKYNPMYSEPVDQEYLPEELRGVDFFKQ 442


>AL139092-3|CAH73664.1|  665|Homo sapiens Werner helicase
           interacting protein 1 protein.
          Length = 665

 Score =  268 bits (657), Expect = 1e-71
 Identities = 135/286 (47%), Positives = 184/286 (64%), Gaps = 13/286 (4%)

Query: 1   MDKLTTEDVMVILKKAVEYNEAKLINTKETVNKSDEPDQTI--PRYLIEEASLQWLAEMC 58
           ++KL  E ++ IL +A+      ++++    +       +   P   IE+ ++  LA + 
Sbjct: 377 LEKLPVEAMVTILMRAINSLGIHVLDSSRPTDPLSHSSNSSSEPAMFIEDKAVDTLAYLS 436

Query: 59  DGDARVALSALELALNAR--------DPGSDVHLNGPAVLTHDDIKDGIKRSHVVYDKHG 110
           DGDAR  L+ L+LA+ AR              +     ++T +D+K+G++RSH++YD+ G
Sbjct: 437 DGDARAGLNGLQLAVLARLSSRKMFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAG 496

Query: 111 EEHYNTISAIQKCIRAGDDNAALYWTARAMHGGEDPLYIARRFVRMACEDIGLADQSALV 170
           EEHYN ISA+ K +R  D NA+LYW AR + GGEDPLY+ARR VR A EDIGLAD SAL 
Sbjct: 497 EEHYNCISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALT 556

Query: 171 EAVACFQGCHQIGMPECDVLLAQCAVRLARAPKSREVYNALKRCQQSLKETKGPLPPVPL 230
           +AVA +QGCH IGMPEC+VLLAQC V  ARAPKS EVY+A    +  L+  +GPLPPVPL
Sbjct: 557 QAVAAYQGCHFIGMPECEVLLAQCVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPL 616

Query: 231 HLRNAPTKLMKQIGYGSG--YNLLSKEESGLTYLPAGVEG-DYFQK 273
           HLRNAPT+LMK +GYG G  YN +  E     YLP  + G D+F++
Sbjct: 617 HLRNAPTRLMKDLGYGKGYKYNPMYSEPVDQEYLPEELRGVDFFKQ 662


>AL139092-2|CAH73663.1|  640|Homo sapiens Werner helicase
           interacting protein 1 protein.
          Length = 640

 Score =  268 bits (657), Expect = 1e-71
 Identities = 135/286 (47%), Positives = 184/286 (64%), Gaps = 13/286 (4%)

Query: 1   MDKLTTEDVMVILKKAVEYNEAKLINTKETVNKSDEPDQTI--PRYLIEEASLQWLAEMC 58
           ++KL  E ++ IL +A+      ++++    +       +   P   IE+ ++  LA + 
Sbjct: 352 LEKLPVEAMVTILMRAINSLGIHVLDSSRPTDPLSHSSNSSSEPAMFIEDKAVDTLAYLS 411

Query: 59  DGDARVALSALELALNAR--------DPGSDVHLNGPAVLTHDDIKDGIKRSHVVYDKHG 110
           DGDAR  L+ L+LA+ AR              +     ++T +D+K+G++RSH++YD+ G
Sbjct: 412 DGDARAGLNGLQLAVLARLSSRKMFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAG 471

Query: 111 EEHYNTISAIQKCIRAGDDNAALYWTARAMHGGEDPLYIARRFVRMACEDIGLADQSALV 170
           EEHYN ISA+ K +R  D NA+LYW AR + GGEDPLY+ARR VR A EDIGLAD SAL 
Sbjct: 472 EEHYNCISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALT 531

Query: 171 EAVACFQGCHQIGMPECDVLLAQCAVRLARAPKSREVYNALKRCQQSLKETKGPLPPVPL 230
           +AVA +QGCH IGMPEC+VLLAQC V  ARAPKS EVY+A    +  L+  +GPLPPVPL
Sbjct: 532 QAVAAYQGCHFIGMPECEVLLAQCVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPL 591

Query: 231 HLRNAPTKLMKQIGYGSG--YNLLSKEESGLTYLPAGVEG-DYFQK 273
           HLRNAPT+LMK +GYG G  YN +  E     YLP  + G D+F++
Sbjct: 592 HLRNAPTRLMKDLGYGKGYKYNPMYSEPVDQEYLPEELRGVDFFKQ 637


>AF218313-1|AAF80563.1|  445|Homo sapiens putative helicase RUVBL
           protein.
          Length = 445

 Score =  268 bits (657), Expect = 1e-71
 Identities = 135/286 (47%), Positives = 184/286 (64%), Gaps = 13/286 (4%)

Query: 1   MDKLTTEDVMVILKKAVEYNEAKLINTKETVNKSDEPDQTI--PRYLIEEASLQWLAEMC 58
           ++KL  E ++ IL +A+      ++++    +       +   P   IE+ ++  LA + 
Sbjct: 157 LEKLPVEAMVTILMRAINSLGIHVLDSSRPTDPLSHSSNSSSEPAMFIEDKAVDTLAYLS 216

Query: 59  DGDARVALSALELALNAR--------DPGSDVHLNGPAVLTHDDIKDGIKRSHVVYDKHG 110
           DGDAR  L+ L+LA+ AR              +     ++T +D+K+G++RSH++YD+ G
Sbjct: 217 DGDARAGLNGLQLAVLARLSSRKMFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAG 276

Query: 111 EEHYNTISAIQKCIRAGDDNAALYWTARAMHGGEDPLYIARRFVRMACEDIGLADQSALV 170
           EEHYN ISA+ K +R  D NA+LYW AR + GGEDPLY+ARR VR A EDIGLAD SAL 
Sbjct: 277 EEHYNCISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALT 336

Query: 171 EAVACFQGCHQIGMPECDVLLAQCAVRLARAPKSREVYNALKRCQQSLKETKGPLPPVPL 230
           +AVA +QGCH IGMPEC+VLLAQC V  ARAPKS EVY+A    +  L+  +GPLPPVPL
Sbjct: 337 QAVAAYQGCHFIGMPECEVLLAQCVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPL 396

Query: 231 HLRNAPTKLMKQIGYGSG--YNLLSKEESGLTYLPAGVEG-DYFQK 273
           HLRNAPT+LMK +GYG G  YN +  E     YLP  + G D+F++
Sbjct: 397 HLRNAPTRLMKDLGYGKGYKYNPMYSEPVDQEYLPEELRGVDFFKQ 442


>AB209723-1|BAD92960.1|  646|Homo sapiens Werner helicase
           interacting protein isoform 1 variant protein.
          Length = 646

 Score =  268 bits (657), Expect = 1e-71
 Identities = 135/286 (47%), Positives = 184/286 (64%), Gaps = 13/286 (4%)

Query: 1   MDKLTTEDVMVILKKAVEYNEAKLINTKETVNKSDEPDQTI--PRYLIEEASLQWLAEMC 58
           ++KL  E ++ IL +A+      ++++    +       +   P   IE+ ++  LA + 
Sbjct: 358 LEKLPVEAMVTILMRAINSLGIHVLDSSRPTDPLSHSSNSSSEPAMFIEDKAVDTLAYLS 417

Query: 59  DGDARVALSALELALNAR--------DPGSDVHLNGPAVLTHDDIKDGIKRSHVVYDKHG 110
           DGDAR  L+ L+LA+ AR              +     ++T +D+K+G++RSH++YD+ G
Sbjct: 418 DGDARAGLNGLQLAVLARLSSRKMFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAG 477

Query: 111 EEHYNTISAIQKCIRAGDDNAALYWTARAMHGGEDPLYIARRFVRMACEDIGLADQSALV 170
           EEHYN ISA+ K +R  D NA+LYW AR + GGEDPLY+ARR VR A EDIGLAD SAL 
Sbjct: 478 EEHYNCISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALT 537

Query: 171 EAVACFQGCHQIGMPECDVLLAQCAVRLARAPKSREVYNALKRCQQSLKETKGPLPPVPL 230
           +AVA +QGCH IGMPEC+VLLAQC V  ARAPKS EVY+A    +  L+  +GPLPPVPL
Sbjct: 538 QAVAAYQGCHFIGMPECEVLLAQCVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPL 597

Query: 231 HLRNAPTKLMKQIGYGSG--YNLLSKEESGLTYLPAGVEG-DYFQK 273
           HLRNAPT+LMK +GYG G  YN +  E     YLP  + G D+F++
Sbjct: 598 HLRNAPTRLMKDLGYGKGYKYNPMYSEPVDQEYLPEELRGVDFFKQ 643


>AK223593-1|BAD97313.1|  665|Homo sapiens Werner helicase
           interacting protein isoform 1 variant protein.
          Length = 665

 Score =  266 bits (651), Expect = 8e-71
 Identities = 134/286 (46%), Positives = 184/286 (64%), Gaps = 13/286 (4%)

Query: 1   MDKLTTEDVMVILKKAVEYNEAKLINTKETVNKSDEPDQTI--PRYLIEEASLQWLAEMC 58
           ++KL  E ++ IL +A+      ++++    +       +   P   IE+ ++  LA + 
Sbjct: 377 LEKLPVEAMVTILMRAINSLGIHVLDSSRPTDPLSHSSNSSSEPAMFIEDKAVDTLAYLS 436

Query: 59  DGDARVALSALELALNAR--------DPGSDVHLNGPAVLTHDDIKDGIKRSHVVYDKHG 110
           DGDAR  L+ L+LA+ AR              +     ++T +D+K+G++RSH++YD+ G
Sbjct: 437 DGDARAGLNGLQLAVLARLSSRKMFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAG 496

Query: 111 EEHYNTISAIQKCIRAGDDNAALYWTARAMHGGEDPLYIARRFVRMACEDIGLADQSALV 170
           EE+YN ISA+ K +R  D NA+LYW AR + GGEDPLY+ARR VR A EDIGLAD SAL 
Sbjct: 497 EEYYNCISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALT 556

Query: 171 EAVACFQGCHQIGMPECDVLLAQCAVRLARAPKSREVYNALKRCQQSLKETKGPLPPVPL 230
           +AVA +QGCH IGMPEC+VLLAQC V  ARAPKS EVY+A    +  L+  +GPLPPVPL
Sbjct: 557 QAVAAYQGCHFIGMPECEVLLAQCVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPL 616

Query: 231 HLRNAPTKLMKQIGYGSG--YNLLSKEESGLTYLPAGVEG-DYFQK 273
           HLRNAPT+LMK +GYG G  YN +  E     YLP  + G D+F++
Sbjct: 617 HLRNAPTRLMKDLGYGKGYKYNPMYSEPVDQEYLPEELRGVDFFKQ 662


>AB056152-1|BAB60709.1|  665|Homo sapiens Werner helicase
           interacting protein protein.
          Length = 665

 Score =  265 bits (650), Expect = 1e-70
 Identities = 133/286 (46%), Positives = 183/286 (63%), Gaps = 13/286 (4%)

Query: 1   MDKLTTEDVMVILKKAVEYNEAKLINTKETVNKSDEPDQTI--PRYLIEEASLQWLAEMC 58
           ++KL  E ++ IL +A+      ++++    +       +   P   IE+ ++  LA + 
Sbjct: 377 LEKLPVEAMVTILMRAINSLGIHVLDSSRPTDPLSHSSNSSSEPAMFIEDKAVDTLAYLS 436

Query: 59  DGDARVALSALELALNAR--------DPGSDVHLNGPAVLTHDDIKDGIKRSHVVYDKHG 110
           DGDAR  L+ L+LA+ AR              +     ++T +D+K+G++RSH++YD+ G
Sbjct: 437 DGDARAGLNGLQLAVLARLSSRKMFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAG 496

Query: 111 EEHYNTISAIQKCIRAGDDNAALYWTARAMHGGEDPLYIARRFVRMACEDIGLADQSALV 170
           EEHYN ISA+ K +R  D NA+LYW AR + GGEDPLY+ARR VR A EDIGLAD SAL 
Sbjct: 497 EEHYNCISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALT 556

Query: 171 EAVACFQGCHQIGMPECDVLLAQCAVRLARAPKSREVYNALKRCQQSLKETKGPLPPVPL 230
           +AVA +QGCH +GMPEC+V LAQC V  ARAPKS EVY+A    +  L+  +GPLPPVPL
Sbjct: 557 QAVAAYQGCHFMGMPECEVFLAQCVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPL 616

Query: 231 HLRNAPTKLMKQIGYGSG--YNLLSKEESGLTYLPAGVEG-DYFQK 273
           HLRNAPT+LMK +GYG G  YN +  E     YLP  + G D+F++
Sbjct: 617 HLRNAPTRLMKDLGYGKGYKYNPMYSEPVDQEYLPEELRGVDFFKQ 662


>AL139092-5|CAH73666.1|  281|Homo sapiens Werner helicase
           interacting protein 1 protein.
          Length = 281

 Score =  264 bits (646), Expect = 3e-70
 Identities = 129/243 (53%), Positives = 166/243 (68%), Gaps = 11/243 (4%)

Query: 42  PRYLIEEASLQWLAEMCDGDARVALSALELALNAR--------DPGSDVHLNGPAVLTHD 93
           P   IE+ ++  LA + DGDAR  L+ L+LA+ AR              +     ++T +
Sbjct: 36  PAMFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARLSSRKMFCKKSGQSYSPSRVLITEN 95

Query: 94  DIKDGIKRSHVVYDKHGEEHYNTISAIQKCIRAGDDNAALYWTARAMHGGEDPLYIARRF 153
           D+K+G++RSH++YD+ GEEHYN ISA+ K +R  D NA+LYW AR + GGEDPLY+ARR 
Sbjct: 96  DVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRL 155

Query: 154 VRMACEDIGLADQSALVEAVACFQGCHQIGMPECDVLLAQCAVRLARAPKSREVYNALKR 213
           VR A EDIGLAD SAL +AVA +QGCH IGMPEC+VLLAQC V  ARAPKS EVY+A   
Sbjct: 156 VRFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQCVVYFARAPKSIEVYSAYNN 215

Query: 214 CQQSLKETKGPLPPVPLHLRNAPTKLMKQIGYGSG--YNLLSKEESGLTYLPAGVEG-DY 270
            +  L+  +GPLPPVPLHLRNAPT+LMK +GYG G  YN +  E     YLP  + G D+
Sbjct: 216 VKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNPMYSEPVDQEYLPEELRGVDF 275

Query: 271 FQK 273
           F++
Sbjct: 276 FKQ 278


>AK026179-1|BAB15383.1|  281|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ22526 fis, clone HRC12794. ).
          Length = 281

 Score =  261 bits (639), Expect = 2e-69
 Identities = 128/243 (52%), Positives = 165/243 (67%), Gaps = 11/243 (4%)

Query: 42  PRYLIEEASLQWLAEMCDGDARVALSALELALNAR--------DPGSDVHLNGPAVLTHD 93
           P   IE+ ++  LA + DGDAR  L+ L+LA+ AR              +     ++T +
Sbjct: 36  PAMFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARLSSRKMFCKKSGQSYSPSRVLITEN 95

Query: 94  DIKDGIKRSHVVYDKHGEEHYNTISAIQKCIRAGDDNAALYWTARAMHGGEDPLYIARRF 153
           D+K+G++RSH++YD+ GEEHYN ISA+ K +R  D NA+LYW AR + GGEDPLY+ARR 
Sbjct: 96  DVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRL 155

Query: 154 VRMACEDIGLADQSALVEAVACFQGCHQIGMPECDVLLAQCAVRLARAPKSREVYNALKR 213
           VR A  DIGLAD SAL +AVA +QGCH IGMPEC+VLLAQC V  ARAPKS EVY+A   
Sbjct: 156 VRFASGDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQCVVYFARAPKSIEVYSAYNN 215

Query: 214 CQQSLKETKGPLPPVPLHLRNAPTKLMKQIGYGSG--YNLLSKEESGLTYLPAGVEG-DY 270
            +  L+  +GPLPPVPLHLRNAPT+LMK +GYG G  YN +  E     YLP  + G D+
Sbjct: 216 VKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNPMYSEPVDQEYLPEELRGVDF 275

Query: 271 FQK 273
           F++
Sbjct: 276 FKQ 278


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.317    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,172,131
Number of Sequences: 224733
Number of extensions: 1719845
Number of successful extensions: 4251
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4221
Number of HSP's gapped (non-prelim): 10
length of query: 278
length of database: 73,234,838
effective HSP length: 89
effective length of query: 189
effective length of database: 53,233,601
effective search space: 10061150589
effective search space used: 10061150589
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 65 (30.3 bits)

- SilkBase 1999-2023 -