GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003010-TA|BGIBMGA003010-PA|IPR008921|DNA polymerase III
clamp loader subunit, C-terminal
         (278 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   3.0  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   4.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.2  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 211 LKRCQQSLKETKGPLPPVPLHLRNAPTKL 239
           +K  ++ L ET    PPVPL  R   T L
Sbjct: 397 MKYLERCLLETLRMYPPVPLIAREIKTDL 425


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 238 KLMKQIGYGSGYNLLSKEESGLTYLP 263
           KLMK+ G  +G  +   + SGL  LP
Sbjct: 128 KLMKKKGINNGIIVNINDASGLNLLP 153


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/8 (87%), Positives = 8/8 (100%)

Query: 224 PLPPVPLH 231
           PLPP+PLH
Sbjct: 440 PLPPLPLH 447


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/8 (87%), Positives = 8/8 (100%)

Query: 224 PLPPVPLH 231
           PLPP+PLH
Sbjct: 440 PLPPLPLH 447


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 86  GPAVLTHDDIKDGIKRSHVVYDKHGE 111
           G  V  H D+   +  SHV+ +  GE
Sbjct: 471 GQYVTVHGDVISHVNISHVMVEDGGE 496


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 86  GPAVLTHDDIKDGIKRSHVVYDKHGE 111
           G  V  H D+   +  SHV+ +  GE
Sbjct: 471 GQYVTVHGDVISHVNISHVMVEDGGE 496


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,550
Number of Sequences: 429
Number of extensions: 3361
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 6
length of query: 278
length of database: 140,377
effective HSP length: 57
effective length of query: 221
effective length of database: 115,924
effective search space: 25619204
effective search space used: 25619204
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)