Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA003003-TA|BGIBMGA003003-PA|undefined
(62 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0122 - 13079268-13079801 28 0.82
01_06_0251 - 27885236-27885775,27887383-27887529 28 0.82
12_02_1005 + 25235757-25235915,25236258-25236374,25236467-252365... 26 3.3
11_06_0196 + 21144094-21144483 25 5.8
10_02_0175 - 6207485-6207898 25 5.8
05_05_0022 + 21592403-21593083,21593720-21594208 25 5.8
11_06_0564 - 25022353-25022546,25022654-25022894,25022936-250230... 25 7.7
09_02_0343 + 7514514-7514948 25 7.7
06_01_0801 - 5993726-5994160,5994811-5994969,5995071-5995211,599... 25 7.7
02_03_0131 - 15576422-15577021 25 7.7
>10_07_0122 - 13079268-13079801
Length = 177
Score = 28.3 bits (60), Expect = 0.82
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 7 LEKRGGCKEESKWRERCAGRGRKHRHALHGH-RTNETVVVE 46
+E G E W++ C G+GR+ + + G RT VVV+
Sbjct: 71 MEASNGNGYERGWQDGCEGQGRRPQARMAGRPRTTTAVVVD 111
>01_06_0251 - 27885236-27885775,27887383-27887529
Length = 228
Score = 28.3 bits (60), Expect = 0.82
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 11 GGCKEESKWRERCAGRGRKHRHALHGHRTNETVVVEAGDSCTRFNLPQRDR 61
GG ++ R C +G +HR + H E A D +P+R R
Sbjct: 44 GGVNDKDSTRRGCGRKGVEHRFGFNTHDKEEIEKDTASDMKRSRRIPRRTR 94
>12_02_1005 +
25235757-25235915,25236258-25236374,25236467-25236535,
25237509-25237964
Length = 266
Score = 26.2 bits (55), Expect = 3.3
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 11 GGCKEESKWRERCAGRGRKHRHALHGHRTNE 41
G K++ K AG+ +HRHA H E
Sbjct: 61 GERKKKKKKASSAAGKASRHRHAAGAHNLTE 91
>11_06_0196 + 21144094-21144483
Length = 129
Score = 25.4 bits (53), Expect = 5.8
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 5 KQLEKRGGCK--EESKWRERCAGRG 27
KQ E+R GC+ E + WR GRG
Sbjct: 37 KQAEERDGCRAGEGASWRRVGRGRG 61
>10_02_0175 - 6207485-6207898
Length = 137
Score = 25.4 bits (53), Expect = 5.8
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 19 WRERCAGRGRKHRHALHGHR 38
WR R G GR+ RH G R
Sbjct: 19 WRRRGRGGGRRRRHGCGGGR 38
>05_05_0022 + 21592403-21593083,21593720-21594208
Length = 389
Score = 25.4 bits (53), Expect = 5.8
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 12 GCKEESKWRERCAGRGRKHRHALHG--HRTNETVVVEAGDSC 51
GCK E K RE+ G K+ ++ G +++ V+AG +C
Sbjct: 150 GCKVEEKEREQVHSEGSKYYVSVGGGEDQSSNAGDVDAGAAC 191
>11_06_0564 -
25022353-25022546,25022654-25022894,25022936-25023041,
25023341-25023565,25023704-25023793,25025001-25025120,
25025210-25025356,25026282-25026490
Length = 443
Score = 25.0 bits (52), Expect = 7.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 16 ESKWRERCAGRGRKHRHALHGHRT 39
+ KWR+ A R+H H + G RT
Sbjct: 67 DRKWRQGRAEFARRHGHTVAGART 90
>09_02_0343 + 7514514-7514948
Length = 144
Score = 25.0 bits (52), Expect = 7.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 5 KQLEKRGGCKEESKWRERCAGRGRKHRHALHGHR 38
++LE G + E + RER +G R R A G R
Sbjct: 59 RRLEAAGAEEREGRRRERSSGGLRGKRRASRGRR 92
>06_01_0801 -
5993726-5994160,5994811-5994969,5995071-5995211,
5995999-5996097,5996180-5996542,5996929-5997150,
5997257-5997448,5997997-5998056,5998162-5998378,
5998471-5998523,5999013-5999084,5999928-6000113,
6000986-6001132,6002902-6003075,6003149-6003300,
6004269-6004360,6004549-6004710,6004875-6005053,
6005173-6005304,6005454-6005507,6006082-6006191,
6006317-6006487,6006577-6006663,6008488-6008611,
6009355-6009564
Length = 1330
Score = 25.0 bits (52), Expect = 7.7
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 7 LEKRGGCKEESKWRERCAGRGRKHRHALHGHRTN 40
LEK + S R GR H H HG RT+
Sbjct: 866 LEKSHTSRSRSSSRGSSPGRSPVHHHHDHGSRTS 899
>02_03_0131 - 15576422-15577021
Length = 199
Score = 25.0 bits (52), Expect = 7.7
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 8 EKRGGCKEESKWRERCAGRG-RKHRHALHGHRTNETVVVEAG 48
E+R G ++ + R A R R+H H+ H HR + +AG
Sbjct: 54 ERRRGERDRKRSRSPSADRSHRRHSHS-HSHRGRSSPSPDAG 94
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.133 0.425
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,262,384
Number of Sequences: 37544
Number of extensions: 77716
Number of successful extensions: 214
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 205
Number of HSP's gapped (non-prelim): 12
length of query: 62
length of database: 14,793,348
effective HSP length: 42
effective length of query: 20
effective length of database: 13,216,500
effective search space: 264330000
effective search space used: 264330000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)
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