GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003003-TA|BGIBMGA003003-PA|undefined
         (62 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X05991-4|CAA29408.1|  245|Drosophila melanogaster Cs protein.          26   5.4  
AY051905-1|AAK93329.1|  824|Drosophila melanogaster LD39491p pro...    26   7.1  
AY036104-1|AAK63170.1|  975|Drosophila melanogaster zinc finger/...    26   7.1  
AF281146-1|AAK06386.1|  825|Drosophila melanogaster AF10 protein.      26   7.1  
AE014297-559|AAF54065.2|  824|Drosophila melanogaster CG1070-PB,...    26   7.1  
AE014297-556|AAN13342.1|  976|Drosophila melanogaster CG1070-PC,...    26   7.1  
BT023273-1|AAY55689.1|  123|Drosophila melanogaster IP02613p pro...    25   9.4  

>X05991-4|CAA29408.1|  245|Drosophila melanogaster Cs protein.
          Length = 245

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 5  KQLEKRGGCKEESKWRERCAGRGRKHRHAL 34
          KQ+++ G     S W+   +  GR +RHA+
Sbjct: 13 KQIKQAGSGHLSSGWKPHQSSHGRAYRHAI 42


>AY051905-1|AAK93329.1|  824|Drosophila melanogaster LD39491p
          protein.
          Length = 824

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)

Query: 14 KEESKWRERCAGRGRKHRHALHGHRTNE 41
          K + K RE+    G++HRH  H HR  E
Sbjct: 67 KNKKKKREKREREGKEHRH--HKHRDRE 92


>AY036104-1|AAK63170.1|  975|Drosophila melanogaster zinc
          finger/leucine zipper proteinDALF isoform C1 protein.
          Length = 975

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)

Query: 14 KEESKWRERCAGRGRKHRHALHGHRTNE 41
          K + K RE+    G++HRH  H HR  E
Sbjct: 67 KNKKKKREKREREGKEHRH--HKHRDRE 92


>AF281146-1|AAK06386.1|  825|Drosophila melanogaster AF10 protein.
          Length = 825

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)

Query: 14 KEESKWRERCAGRGRKHRHALHGHRTNE 41
          K + K RE+    G++HRH  H HR  E
Sbjct: 67 KNKKKKREKREREGKEHRH--HKHRDRE 92


>AE014297-559|AAF54065.2|  824|Drosophila melanogaster CG1070-PB,
          isoform B protein.
          Length = 824

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)

Query: 14 KEESKWRERCAGRGRKHRHALHGHRTNE 41
          K + K RE+    G++HRH  H HR  E
Sbjct: 67 KNKKKKREKREREGKEHRH--HKHRDRE 92


>AE014297-556|AAN13342.1|  976|Drosophila melanogaster CG1070-PC,
          isoform C protein.
          Length = 976

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)

Query: 14 KEESKWRERCAGRGRKHRHALHGHRTNE 41
          K + K RE+    G++HRH  H HR  E
Sbjct: 67 KNKKKKREKREREGKEHRH--HKHRDRE 92


>BT023273-1|AAY55689.1|  123|Drosophila melanogaster IP02613p
           protein.
          Length = 123

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/19 (52%), Positives = 11/19 (57%)

Query: 20  RERCAGRGRKHRHALHGHR 38
           R R     R+HRH LHG R
Sbjct: 94  RTRAQAPTRRHRHILHGFR 112


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.319    0.133    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,616,017
Number of Sequences: 52641
Number of extensions: 123337
Number of successful extensions: 297
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 280
Number of HSP's gapped (non-prelim): 22
length of query: 62
length of database: 24,830,863
effective HSP length: 43
effective length of query: 19
effective length of database: 22,567,300
effective search space: 428778700
effective search space used: 428778700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)