GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003003-TA|BGIBMGA003003-PA|undefined
         (62 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone methyl...    31   0.076
U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone methyl...    31   0.076
Z82270-3|CAB63205.1|  667|Caenorhabditis elegans Hypothetical pr...    26   2.9  
Z81534-4|CAB04345.1|  277|Caenorhabditis elegans Hypothetical pr...    25   5.0  
U40954-7|AAB52654.2|  145|Caenorhabditis elegans Hypothetical pr...    25   8.8  
AF025451-13|AAB71198.2|  142|Caenorhabditis elegans Hypothetical...    25   8.8  
AC006830-5|AAK68612.2|  569|Caenorhabditis elegans Hypothetical ...    25   8.8  

>U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone
            methyltransferase-likeprotein 1, isoform b protein.
          Length = 1590

 Score = 31.5 bits (68), Expect = 0.076
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 14   KEESKWRERCAGRGRKHRHALHGHRTNETVVVE 46
            +E+ + R+R    G KHR + HGHR   + V E
Sbjct: 1468 REKDRERDRDRREGSKHRDSYHGHRNGSSSVSE 1500


>U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone
            methyltransferase-likeprotein 1, isoform a protein.
          Length = 1604

 Score = 31.5 bits (68), Expect = 0.076
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 14   KEESKWRERCAGRGRKHRHALHGHRTNETVVVE 46
            +E+ + R+R    G KHR + HGHR   + V E
Sbjct: 1482 REKDRERDRDRREGSKHRDSYHGHRNGSSSVSE 1514


>Z82270-3|CAB63205.1|  667|Caenorhabditis elegans Hypothetical
          protein F53H2.3 protein.
          Length = 667

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 5  KQLEKRGGCKEESKWRERCAGRGRKHR 31
          +++  +GGC+EE K  E   GR   HR
Sbjct: 3  REIGWKGGCREEMKEEEEEKGRFDTHR 29


>Z81534-4|CAB04345.1|  277|Caenorhabditis elegans Hypothetical
          protein F37H8.5 protein.
          Length = 277

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 29 KHRHALHGHRTNETVVVEA 47
          KHR A H  + N TV++EA
Sbjct: 66 KHRAATHNQKINITVLIEA 84


>U40954-7|AAB52654.2|  145|Caenorhabditis elegans Hypothetical
          protein ZK813.1 protein.
          Length = 145

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 14 KEESKWRERCAGRGRKHRHALHGHRTNET 42
          K     R R   RGR  RH  HG R +++
Sbjct: 44 KPRKHHRRRHGRRGRHGRHGRHGRRHSDS 72


>AF025451-13|AAB71198.2|  142|Caenorhabditis elegans Hypothetical
          protein C24H12.2 protein.
          Length = 142

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 34 LHGHRTNETVVVEAGDSCTRFNL 56
          +HG + + T+  +AG  CT + L
Sbjct: 50 VHGSKKSSTIFAKAGTQCTEYVL 72


>AC006830-5|AAK68612.2|  569|Caenorhabditis elegans Hypothetical
           protein ZK105.5 protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)

Query: 1   MSIYKQLEKRGGCKEESKWRERC 23
           MSIYKQ E    CK+  K    C
Sbjct: 203 MSIYKQEEVMNQCKDFKKCANEC 225


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.133    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,729,775
Number of Sequences: 27539
Number of extensions: 55686
Number of successful extensions: 117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110
Number of HSP's gapped (non-prelim): 7
length of query: 62
length of database: 12,573,161
effective HSP length: 42
effective length of query: 20
effective length of database: 11,416,523
effective search space: 228330460
effective search space used: 228330460
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)