GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002999-TA|BGIBMGA002999-PA|IPR008952|Tetraspanin,
IPR000301|CD9/CD37/CD63 antigen
         (244 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    49   5e-08
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.84 

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 48.8 bits (111), Expect = 5e-08
 Identities = 39/177 (22%), Positives = 71/177 (40%), Gaps = 10/177 (5%)

Query: 68  IVLISSVAFSCIIKGQPVLLYINYVTHFQYGGFLACIFMMEAGVG--ASVACYRDTFAKG 125
           ++++ S+ F     G    +  ++     +  FL  I +++  V   A +    D   + 
Sbjct: 55  LIVLGSIIFVISFFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKNDDNFRN 114

Query: 126 LRDGLTETITHY--NPQKANF-DFAQTKLHCCGVNNYTDWMRMSPQRVIPISCCVDANNC 182
           + +   E    Y  N +  +F DF Q  L CCGV++ +D+      + IP SCC    N 
Sbjct: 115 ISEKYQEIFNGYFLNSESKDFIDFIQKNLQCCGVHSLSDY----NDKPIPASCCNSPEN- 169

Query: 183 VTANYSEVHQKGCYEVIAEYIESNMDXXXXXXXXXXXXXXXXXXXSCCLANYIKKSK 239
            T + S  +  GC E + + ++                       + CLAN IK ++
Sbjct: 170 NTCSISNSYTNGCVEALKDTVKLAGTVFGSVAIAIAIVELIGIICALCLANSIKNAE 226


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 3/34 (8%)

Query: 163 MRMSPQRVIPISCCVDANNCVTANYSEVHQKGCY 196
           MR  P+R  P+  C  +N  + AN+ E+H+  C+
Sbjct: 107 MRKCPRRHRPV--CA-SNGKIYANHCELHRAACH 137


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.138    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,989
Number of Sequences: 429
Number of extensions: 2670
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 244
length of database: 140,377
effective HSP length: 56
effective length of query: 188
effective length of database: 116,353
effective search space: 21874364
effective search space used: 21874364
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 43 (21.4 bits)