GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002998-TA|BGIBMGA002998-PA|IPR000357|HEAT
         (245 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   2.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   4.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   4.5  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/45 (20%), Positives = 26/45 (57%)

Query: 98  KTVLLNTMLCGCRDDDPLIRTSAISNLAEIARVLHYKMGTIIYEV 142
           ++V  N +L   +D++ ++    ++ L + + ++H K G + Y++
Sbjct: 403 QSVPANDLLTTEKDNNEIVTAQFLNQLKKSSVLVHTKNGRLKYQI 447


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 16/55 (29%), Positives = 25/55 (45%)

Query: 46  LHVLCKEFLKQVLEQNQIVTQEVENKIAELRMKIGDVIVQVTKRLGDMAIVHKTV 100
           L  L  +    VL+Q  ++ + +E+  AE   KIG     V  R  D+    KT+
Sbjct: 543 LFSLSVDHFNAVLDQYPLMRRTMESVAAERLNKIGKNPNLVAHREEDLGSESKTI 597


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 16/55 (29%), Positives = 25/55 (45%)

Query: 46  LHVLCKEFLKQVLEQNQIVTQEVENKIAELRMKIGDVIVQVTKRLGDMAIVHKTV 100
           L  L  +    VL+Q  ++ + +E+  AE   KIG     V  R  D+    KT+
Sbjct: 511 LFSLSVDHFNAVLDQYPLMRRTMESVAAERLNKIGKNPNLVAHREEDLGSESKTI 565


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.139    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,172
Number of Sequences: 429
Number of extensions: 1953
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 3
length of query: 245
length of database: 140,377
effective HSP length: 56
effective length of query: 189
effective length of database: 116,353
effective search space: 21990717
effective search space used: 21990717
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 43 (21.4 bits)