GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002997-TA|BGIBMGA002997-PA|IPR006603|Cystinosin/ERS1p
repeat
         (245 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   4.5  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.9  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.9  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.9  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.9  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.9  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.9  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.9  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.9  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 113 TAQPDETARWLNQRSGI 129
           T  P E A+W+++RS I
Sbjct: 434 TMTPQEIAQWIDRRSRI 450


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/55 (21%), Positives = 22/55 (40%)

Query: 74  ELPLLIQSIVMNVTMFVMIHLCVSVRKKNQIIRARERIFTAQPDETARWLNQRSG 128
           E P+  +S  + V   + +   + V +KNQI+     +     D   +W     G
Sbjct: 2   ERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/55 (21%), Positives = 22/55 (40%)

Query: 74  ELPLLIQSIVMNVTMFVMIHLCVSVRKKNQIIRARERIFTAQPDETARWLNQRSG 128
           E P+  +S  + V   + +   + V +KNQI+     +     D   +W     G
Sbjct: 2   ERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/55 (21%), Positives = 22/55 (40%)

Query: 74  ELPLLIQSIVMNVTMFVMIHLCVSVRKKNQIIRARERIFTAQPDETARWLNQRSG 128
           E P+  +S  + V   + +   + V +KNQI+     +     D   +W     G
Sbjct: 2   ERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/55 (21%), Positives = 22/55 (40%)

Query: 74  ELPLLIQSIVMNVTMFVMIHLCVSVRKKNQIIRARERIFTAQPDETARWLNQRSG 128
           E P+  +S  + V   + +   + V +KNQI+     +     D   +W     G
Sbjct: 2   ERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/55 (21%), Positives = 22/55 (40%)

Query: 74  ELPLLIQSIVMNVTMFVMIHLCVSVRKKNQIIRARERIFTAQPDETARWLNQRSG 128
           E P+  +S  + V   + +   + V +KNQI+     +     D   +W     G
Sbjct: 2   ERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/55 (21%), Positives = 22/55 (40%)

Query: 74  ELPLLIQSIVMNVTMFVMIHLCVSVRKKNQIIRARERIFTAQPDETARWLNQRSG 128
           E P+  +S  + V   + +   + V +KNQI+     +     D   +W     G
Sbjct: 2   ERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/55 (21%), Positives = 22/55 (40%)

Query: 74  ELPLLIQSIVMNVTMFVMIHLCVSVRKKNQIIRARERIFTAQPDETARWLNQRSG 128
           E P+  +S  + V   + +   + V +KNQI+     +     D   +W     G
Sbjct: 70  ERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/55 (21%), Positives = 22/55 (40%)

Query: 74  ELPLLIQSIVMNVTMFVMIHLCVSVRKKNQIIRARERIFTAQPDETARWLNQRSG 128
           E P+  +S  + V   + +   + V +KNQI+     +     D   +W     G
Sbjct: 70  ERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 76  PLLIQSIVMNVTMFVMIHLCVSVRKKNQIIRARERIFTAQPDETARW 122
           P++  S V+ V + + +   + V  KNQI+     +  +  D   RW
Sbjct: 46  PVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLRW 92


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 76  PLLIQSIVMNVTMFVMIHLCVSVRKKNQIIRARERIFTAQPDETARW 122
           P++  S V+ V + + +   + V  KNQI+     +  +  D   RW
Sbjct: 46  PVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLRW 92


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.140    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,160
Number of Sequences: 429
Number of extensions: 2495
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 11
length of query: 245
length of database: 140,377
effective HSP length: 56
effective length of query: 189
effective length of database: 116,353
effective search space: 21990717
effective search space used: 21990717
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 43 (21.4 bits)