GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002996-TA|BGIBMGA002996-PA|IPR001611|Leucine-rich
repeat, IPR008978|HSP20-like chaperone, IPR008162|Inorganic
pyrophosphatase
         (429 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    23   3.7  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   6.5  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   6.5  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   8.7  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   8.7  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   8.7  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   8.7  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   8.7  

>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 2/81 (2%)

Query: 170 VFEQENYRQQRRKQKSRLEKTIKDKWENEYKDMDPEERNKKFWAEKCEHAPEVRYEIEKM 229
           + E+   R++  + + R +K+ K+  EN Y+      + +    ++ E + E +      
Sbjct: 29  LLEERTSRKRYSRSREREQKSYKN--ENSYRKYRETSKERSRDRKERERSKEPKIISSLS 86

Query: 230 RKLKLKSYETETEQEEKRTYK 250
              K  +Y       +K  YK
Sbjct: 87  NNYKYSNYNNYNNYNKKLYYK 107


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 15/60 (25%), Positives = 23/60 (38%)

Query: 188 EKTIKDKWENEYKDMDPEERNKKFWAEKCEHAPEVRYEIEKMRKLKLKSYETETEQEEKR 247
           E++       EYK+ D          EK       R    + R+ + KSY+ E E  + R
Sbjct: 1   ERSCSRDRNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQKSYKNEREYRKYR 60


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 15/60 (25%), Positives = 23/60 (38%)

Query: 188 EKTIKDKWENEYKDMDPEERNKKFWAEKCEHAPEVRYEIEKMRKLKLKSYETETEQEEKR 247
           E++       EYK+ D          EK       R    + R+ + KSY+ E E  + R
Sbjct: 1   ERSCSRDRNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQKSYKNEREYRKYR 60


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 15/60 (25%), Positives = 23/60 (38%)

Query: 188 EKTIKDKWENEYKDMDPEERNKKFWAEKCEHAPEVRYEIEKMRKLKLKSYETETEQEEKR 247
           E++       EY+  D +        EK       R    + R+ + KSY+ E E  E R
Sbjct: 1   ERSCSRDRNREYRKKDRQYEKLYNEKEKFLEEKTSRKRYSRSREREQKSYKNEREYREYR 60


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 15/60 (25%), Positives = 23/60 (38%)

Query: 188 EKTIKDKWENEYKDMDPEERNKKFWAEKCEHAPEVRYEIEKMRKLKLKSYETETEQEEKR 247
           E++       EY+  D +        EK       R    + R+ + KSY+ E E  E R
Sbjct: 1   ERSCSRDRNREYRKKDRQYEKLYNEKEKFLEEKTSRKRYSRSREREQKSYKNEREYREYR 60


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 15/60 (25%), Positives = 23/60 (38%)

Query: 188 EKTIKDKWENEYKDMDPEERNKKFWAEKCEHAPEVRYEIEKMRKLKLKSYETETEQEEKR 247
           E++       EY+  D +        EK       R    + R+ + KSY+ E E  E R
Sbjct: 1   ERSCSRDRNREYRKKDRQYEKLYNEKEKFLEEKTSRKRYSRSREREQKSYKNEREYREYR 60


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 15/60 (25%), Positives = 23/60 (38%)

Query: 188 EKTIKDKWENEYKDMDPEERNKKFWAEKCEHAPEVRYEIEKMRKLKLKSYETETEQEEKR 247
           E++       EY+  D +        EK       R    + R+ + KSY+ E E  E R
Sbjct: 1   ERSCSRDRNREYRKKDRQYEKLYNEKEKFLEEKTSRKRYSRSREREQKSYKNEREYREYR 60


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 192 KDKWENEYKDMDPEERNKKFWAEKCEHAPE--VRYEIEKMRKLKLKSYETETEQEEKR 247
           KD+   EYK+ D   R +K + EK +   E   R    + R+ + KSY+ E +  + R
Sbjct: 6   KDR-NREYKEKD--RRYEKLYNEKEKLLEERTSRKRYSRSREREQKSYKNERKYRKYR 60


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.135    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,171
Number of Sequences: 429
Number of extensions: 5247
Number of successful extensions: 50
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 43
Number of HSP's gapped (non-prelim): 9
length of query: 429
length of database: 140,377
effective HSP length: 60
effective length of query: 369
effective length of database: 114,637
effective search space: 42301053
effective search space used: 42301053
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)