GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002995-TA|BGIBMGA002995-PA|IPR001699|Transcription
factor, T-box, IPR008967|p53-like transcription factor, DNA-binding
         (170 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    27   1.5  
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom...    25   6.0  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   7.9  

>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 67  DLDQHNNNLTLEEKAILAARSQLFLRAAYPLYGVPAAAL 105
           D++   N L + EKA+L + + L+  AA P   +P+  L
Sbjct: 5   DVEDLINQLDISEKAMLLSGTDLWHTAAIPRLNIPSIRL 43


>SPAC3F10.10c |map3||pheromone M-factor receptor
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 12 WITVSVLFQITKLKIDSNPFAKGFR 36
          W+T++ L  + +  I SNP+A+  R
Sbjct: 40 WLTLTTLIYVVESAIWSNPYAETIR 64


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 36  RDSSRLTEFERETMESMLAEQHYLRSPLRPFDLDQHNNNLTLEEKAILAARSQL 89
           ++S+R    +    ES L+        L+   +D++ NNL+ ++K +    SQL
Sbjct: 377 KESNRTIHSQLTDAESKLSSFEQENKSLKG-SIDEYQNNLSSKDKMVKQVSSQL 429


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.326    0.135    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 470,667
Number of Sequences: 5004
Number of extensions: 16029
Number of successful extensions: 72
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 70
Number of HSP's gapped (non-prelim): 3
length of query: 170
length of database: 2,362,478
effective HSP length: 68
effective length of query: 102
effective length of database: 2,022,206
effective search space: 206265012
effective search space used: 206265012
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 51 (24.6 bits)