GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002995-TA|BGIBMGA002995-PA|IPR001699|Transcription
factor, T-box, IPR008967|p53-like transcription factor, DNA-binding
         (170 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1332 - 29403320-29407804                                         31   0.37 
12_01_0685 + 5848758-5849162,5849282-5849341,5849803-5849919,585...    29   1.5  
05_05_0318 + 24052022-24053858,24053935-24054132,24054363-24055351     29   2.6  
10_01_0133 + 1621574-1625779                                           27   6.0  
04_04_1228 + 31888350-31892228,31892568-31893298,31893511-318935...    27   6.0  
01_07_0205 - 41978437-41980599,41980805-41981215                       27   8.0  
01_01_0088 + 688792-691441,691629-693013                               27   8.0  

>06_03_1332 - 29403320-29407804
          Length = 1494

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 13/57 (22%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 3   IFRHFKVRMWITVSVLFQITKLKIDSNPFAKGFRDSSRLTEFERETMESMLAEQHYL 59
           +  HF V++W+ VS+ F + +LK + + +    +D  +  + + +++E  L  +  L
Sbjct: 327 VHNHFDVKVWVCVSLNFNLYRLKEEISKWIPKLKDDEKYVDMD-DSIEQRLKSKKLL 382


>12_01_0685 +
           5848758-5849162,5849282-5849341,5849803-5849919,
           5850013-5850110,5850470-5851020,5851118-5851221,
           5851298-5851387
          Length = 474

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 1   MHIFRHFKVRMWITVSVLFQITKLKIDSNPFAKGFRDSSRLTEFERETMESM 52
           +HIF H ++ M++ + +L     LK D     K  +DS++L       ++SM
Sbjct: 390 VHIFSHIRLTMFVELMIL----NLKDDGEELCKEGQDSTKLRLINENAVQSM 437


>05_05_0318 + 24052022-24053858,24053935-24054132,24054363-24055351
          Length = 1007

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 1   MHIFRHFKVRMWITVSVLFQITKL-KIDSNPFAKGFRDSSRLTEFERETMESMLAEQHYL 59
           + + +HF++RMW+ VS  F   KL K      A G   ++      +E + + L  + +L
Sbjct: 219 VRVKKHFQLRMWLCVSENFDEAKLTKETIESVASGLSSATTNMNLLQEDLSNKLKGKRFL 278


>10_01_0133 + 1621574-1625779
          Length = 1401

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 9/20 (45%), Positives = 15/20 (75%)

Query: 5   RHFKVRMWITVSVLFQITKL 24
           +HF VR+W+ VS+ F + +L
Sbjct: 248 KHFHVRIWVHVSLRFDVLRL 267


>04_04_1228 +
           31888350-31892228,31892568-31893298,31893511-31893586,
           31894089-31894164,31894571-31894656,31895414-31895482,
           31895579-31895588,31895711-31896207
          Length = 1807

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 1   MHIFRHFKVRMWITVSVLFQITKL 24
           + +  HF+V++WI VS  F + KL
Sbjct: 345 LEVQNHFQVKVWICVSQNFSVDKL 368


>01_07_0205 - 41978437-41980599,41980805-41981215
          Length = 857

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 5   RHFKVRMWITVSVLFQITKL 24
           +HF VR+W+TVS  F  T +
Sbjct: 164 QHFPVRLWVTVSEDFDTTTI 183


>01_01_0088 + 688792-691441,691629-693013
          Length = 1344

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 5   RHFKVRMWITVSVLFQITKL 24
           +HF V +W+ VS  F +T+L
Sbjct: 280 QHFTVMIWVCVSTTFDVTEL 299


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.326    0.135    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,861,977
Number of Sequences: 37544
Number of extensions: 90674
Number of successful extensions: 323
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 317
Number of HSP's gapped (non-prelim): 7
length of query: 170
length of database: 14,793,348
effective HSP length: 77
effective length of query: 93
effective length of database: 11,902,460
effective search space: 1106928780
effective search space used: 1106928780
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 57 (27.1 bits)