Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002995-TA|BGIBMGA002995-PA|IPR001699|Transcription
factor, T-box, IPR008967|p53-like transcription factor, DNA-binding
(170 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U56081-1|AAB37243.1| 346|Caenorhabditis elegans T-BOX 12 protein. 40 0.001
AJ252168-1|CAB65731.1| 346|Caenorhabditis elegans T-box DNA bin... 39 0.002
AF025468-3|AAF02176.1| 346|Caenorhabditis elegans Male abnormal... 39 0.002
U11279-3|AAF99909.1| 423|Caenorhabditis elegans T box family pr... 36 0.020
AF025459-2|AAB70985.1| 252|Caenorhabditis elegans Mesodermal li... 35 0.035
U50193-7|AAL11479.1| 327|Caenorhabditis elegans T box family pr... 34 0.062
Z29443-10|CAA82578.2| 315|Caenorhabditis elegans Hypothetical p... 32 0.25
AB121091-1|BAD14918.1| 315|Caenorhabditis elegans T-box transcr... 32 0.25
Z29443-9|CAA82575.2| 292|Caenorhabditis elegans Hypothetical pr... 30 1.0
AB019521-1|BAC66463.1| 292|Caenorhabditis elegans T-box transcr... 30 1.0
AL031630-13|CAA20992.1| 814|Caenorhabditis elegans Hypothetical... 29 2.3
Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical pr... 28 3.1
AL117202-9|CAB57892.1| 352|Caenorhabditis elegans Hypothetical ... 28 3.1
U55365-8|AAA98573.2| 383|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical pr... 27 9.4
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 27 9.4
>U56081-1|AAB37243.1| 346|Caenorhabditis elegans T-BOX 12 protein.
Length = 346
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/46 (52%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 21 ITKLKIDSNPFAKGFRDSSRLT--EFERETMESMLAEQHYLRSPLR 64
ITKLKI+ NPFAKGFRD + + E ER + ML+ Y S LR
Sbjct: 252 ITKLKIEKNPFAKGFRDPTGRSPDEMERSPGDMMLS-NFYHSSALR 296
>AJ252168-1|CAB65731.1| 346|Caenorhabditis elegans T-box DNA
binding protein protein.
Length = 346
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/40 (50%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 21 ITKLKIDSNPFAKGFRDSSRLT--EFERETMESMLAEQHY 58
ITKLKI+ NPFAKGFRD + + E ER + ML+ ++
Sbjct: 252 ITKLKIEKNPFAKGFRDPTGRSPDEMERSPGDMMLSNFYH 291
>AF025468-3|AAF02176.1| 346|Caenorhabditis elegans Male abnormal
protein 9 protein.
Length = 346
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/40 (50%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 21 ITKLKIDSNPFAKGFRDSSRLT--EFERETMESMLAEQHY 58
ITKLKI+ NPFAKGFRD + + E ER + ML+ ++
Sbjct: 252 ITKLKIEKNPFAKGFRDPTGRSPDEMERSPGDMMLSNFYH 291
>U11279-3|AAF99909.1| 423|Caenorhabditis elegans T box family
protein 2 protein.
Length = 423
Score = 35.5 bits (78), Expect = 0.020
Identities = 13/19 (68%), Positives = 19/19 (100%)
Query: 20 QITKLKIDSNPFAKGFRDS 38
++T+LKI++NPFAKGFRD+
Sbjct: 226 KVTELKIENNPFAKGFRDA 244
>AF025459-2|AAB70985.1| 252|Caenorhabditis elegans Mesodermal
lineage specificationprotein 1 protein.
Length = 252
Score = 34.7 bits (76), Expect = 0.035
Identities = 14/18 (77%), Positives = 17/18 (94%)
Query: 20 QITKLKIDSNPFAKGFRD 37
+IT LKI+SNPFAKGFR+
Sbjct: 193 RITSLKIESNPFAKGFRE 210
>U50193-7|AAL11479.1| 327|Caenorhabditis elegans T box family
protein 7 protein.
Length = 327
Score = 33.9 bits (74), Expect = 0.062
Identities = 13/17 (76%), Positives = 16/17 (94%)
Query: 21 ITKLKIDSNPFAKGFRD 37
+TK KID+NPFAKGFR+
Sbjct: 222 VTKCKIDNNPFAKGFRN 238
>Z29443-10|CAA82578.2| 315|Caenorhabditis elegans Hypothetical
protein T07C4.2 protein.
Length = 315
Score = 31.9 bits (69), Expect = 0.25
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 21 ITKLKIDSNPFAKGFRDSSR 40
+ KLKI NPFAKGFR+ S+
Sbjct: 179 VIKLKIKFNPFAKGFREGSQ 198
>AB121091-1|BAD14918.1| 315|Caenorhabditis elegans T-box
transcription factor TBX-8 protein.
Length = 315
Score = 31.9 bits (69), Expect = 0.25
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 21 ITKLKIDSNPFAKGFRDSSR 40
+ KLKI NPFAKGFR+ S+
Sbjct: 179 VIKLKIKFNPFAKGFREGSQ 198
>Z29443-9|CAA82575.2| 292|Caenorhabditis elegans Hypothetical
protein T07C4.6 protein.
Length = 292
Score = 29.9 bits (64), Expect = 1.0
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 20 QITKLKIDSNPFAKGFRDSS 39
+IT LKI N FAKGFRD +
Sbjct: 177 KITDLKIKHNSFAKGFRDGN 196
>AB019521-1|BAC66463.1| 292|Caenorhabditis elegans T-box
transcription factor TBX-9 protein.
Length = 292
Score = 29.9 bits (64), Expect = 1.0
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 20 QITKLKIDSNPFAKGFRDSS 39
+IT LKI N FAKGFRD +
Sbjct: 177 KITDLKIKHNSFAKGFRDGN 196
>AL031630-13|CAA20992.1| 814|Caenorhabditis elegans Hypothetical
protein Y38H6C.14 protein.
Length = 814
Score = 28.7 bits (61), Expect = 2.3
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 13 ITVSVLFQITKLKIDSNPFAKGFRDSSRLTEFER--ETMESMLAEQHYLRSPLRPFDLDQ 70
+TV FQ++ K N +AK F S +TE ++ E + L + P+ P Q
Sbjct: 359 VTVPKPFQLSLRKSTGNTYAKKFM-SGLITEKQKLEEDAKKALENTKFRAKPV-PKSTYQ 416
Query: 71 HNNNLTLEEKAILAARSQLFLRA 93
N E+K + A R ++ +A
Sbjct: 417 PTNTFATEQKYVEAMRKKVAAKA 439
>Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical
protein F29G6.3c protein.
Length = 1453
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 43 EFERETMESMLAEQHYLRSPLRPFDLDQHNNNLTLEEKAI 82
E + E ++ ++ E HY+ PL D+HN N+T E I
Sbjct: 789 EKKTEAVKDVVHEHHYI--PLTAHKTDEHNVNITREHHYI 826
>Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical
protein F29G6.3b protein.
Length = 1785
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 43 EFERETMESMLAEQHYLRSPLRPFDLDQHNNNLTLEEKAI 82
E + E ++ ++ E HY+ PL D+HN N+T E I
Sbjct: 789 EKKTEAVKDVVHEHHYI--PLTAHKTDEHNVNITREHHYI 826
>AL117202-9|CAB57892.1| 352|Caenorhabditis elegans Hypothetical
protein Y47D3A.12 protein.
Length = 352
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 20 QITKLKIDSNPFAKGFR-DSSRLTEFERETMES 51
++TKLK+ N FA GFR + R E E E+
Sbjct: 217 ELTKLKVHHNKFASGFRSNGKRRLSSESENSEN 249
>U55365-8|AAA98573.2| 383|Caenorhabditis elegans Hypothetical
protein C12D5.2 protein.
Length = 383
Score = 27.9 bits (59), Expect = 4.1
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 24 LKIDSNPFAKGFRDSSRLTE----FERETMESMLAEQHYLRSPLRPFDLDQHNNNLT 76
L + NP A FR + LT+ + E ++ ++ E YL L F L +N N T
Sbjct: 85 LLVGMNPNALNFRTTKNLTQSLKNSKEEKIKDVINELTYLDCKLEQFRLSAYNPNWT 141
>Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical protein
T24B8.7b protein.
Length = 2923
Score = 26.6 bits (56), Expect = 9.4
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 29 NPFAKGFRDSSRLTEFERETMESMLAEQHYLRSPLRPFD 67
N F K R+ R+ E R+T E ML + RS +P D
Sbjct: 1327 NTFIKMIRNEFRIREEMRKTCERMLQSRQTPRSIDQPMD 1365
>Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical protein
T24B8.7a protein.
Length = 2920
Score = 26.6 bits (56), Expect = 9.4
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 29 NPFAKGFRDSSRLTEFERETMESMLAEQHYLRSPLRPFD 67
N F K R+ R+ E R+T E ML + RS +P D
Sbjct: 1327 NTFIKMIRNEFRIREEMRKTCERMLQSRQTPRSIDQPMD 1365
>Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical protein
T24B8.7b protein.
Length = 2923
Score = 26.6 bits (56), Expect = 9.4
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 29 NPFAKGFRDSSRLTEFERETMESMLAEQHYLRSPLRPFD 67
N F K R+ R+ E R+T E ML + RS +P D
Sbjct: 1327 NTFIKMIRNEFRIREEMRKTCERMLQSRQTPRSIDQPMD 1365
>Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical protein
T24B8.7a protein.
Length = 2920
Score = 26.6 bits (56), Expect = 9.4
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 29 NPFAKGFRDSSRLTEFERETMESMLAEQHYLRSPLRPFD 67
N F K R+ R+ E R+T E ML + RS +P D
Sbjct: 1327 NTFIKMIRNEFRIREEMRKTCERMLQSRQTPRSIDQPMD 1365
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 26.6 bits (56), Expect = 9.4
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 35 FRDSSRLTEFERETMESMLAEQHYLRSPLRPFDLDQHNNNLTLEEKAILAARSQLFLRAA 94
F SS + E+ M+ + + + PF D NLT E+ +L + + F++ A
Sbjct: 5346 FSGSSNIHEYWENLMDGICSTGNNKYLLKNPFGFDNKFFNLTDEDARVLDPQVRKFIQHA 5405
Query: 95 Y 95
Y
Sbjct: 5406 Y 5406
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.326 0.135 0.417
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,456,482
Number of Sequences: 27539
Number of extensions: 81835
Number of successful extensions: 329
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 313
Number of HSP's gapped (non-prelim): 20
length of query: 170
length of database: 12,573,161
effective HSP length: 76
effective length of query: 94
effective length of database: 10,480,197
effective search space: 985138518
effective search space used: 985138518
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 56 (26.6 bits)
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