GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002995-TA|BGIBMGA002995-PA|IPR001699|Transcription
factor, T-box, IPR008967|p53-like transcription factor, DNA-binding
         (170 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   6.4  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   8.5  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 13/47 (27%), Positives = 20/47 (42%)

Query: 50  ESMLAEQHYLRSPLRPFDLDQHNNNLTLEEKAILAARSQLFLRAAYP 96
           ES +     L++    F +  H   LT+EEK  +  R   F  +  P
Sbjct: 392 ESNITWPGRLQTKPEGFMIPTHLKVLTIEEKPFVYVREIAFSESCLP 438


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
          receptor 2 protein.
          Length = 210

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 17/68 (25%), Positives = 27/68 (39%)

Query: 20 QITKLKIDSNPFAKGFRDSSRLTEFERETMESMLAEQHYLRSPLRPFDLDQHNNNLTLEE 79
          QI  LK    P  +       +     E  ++  AEQ   + PL P    Q  N L ++ 
Sbjct: 1  QIQHLKNIMKPLMEFSATLDTVVPNSGELFKAGSAEQPKEQEPLPPVTPPQGENMLDMDL 60

Query: 80 KAILAARS 87
          + I + R+
Sbjct: 61 RGIYSNRT 68


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.135    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,424
Number of Sequences: 429
Number of extensions: 1349
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 170
length of database: 140,377
effective HSP length: 54
effective length of query: 116
effective length of database: 117,211
effective search space: 13596476
effective search space used: 13596476
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 41 (20.6 bits)