GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002990-TA|BGIBMGA002990-PA|IPR001683|Phox-like
         (227 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    26   0.25 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    26   0.25 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.1  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   7.1  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 13/68 (19%), Positives = 35/68 (51%)

Query: 34  KEQPTLLNNLSFPRKTVVGNFDANLISTRCAAFESLLDLMSNDSRLRDCPAAITFFQDVE 93
           K QPT  ++     +++ G  +  L++   +++ +L   ++N+S   +    IT  Q ++
Sbjct: 34  KLQPTYFHHTYIIYESLCGRHEKRLLNELLSSYNTLERPVANESEPLEVKFGITLQQIID 93

Query: 94  LSEAKRLI 101
           + E  +++
Sbjct: 94  VDEKNQIL 101


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 13/68 (19%), Positives = 35/68 (51%)

Query: 34  KEQPTLLNNLSFPRKTVVGNFDANLISTRCAAFESLLDLMSNDSRLRDCPAAITFFQDVE 93
           K QPT  ++     +++ G  +  L++   +++ +L   ++N+S   +    IT  Q ++
Sbjct: 34  KLQPTYFHHTYIIYESLCGRHEKRLLNELLSSYNTLERPVANESEPLEVKFGITLQQIID 93

Query: 94  LSEAKRLI 101
           + E  +++
Sbjct: 94  VDEKNQIL 101


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 54  FDANLISTRCAAFESLLDLMSNDSRLRDCPAAITFF 89
           FD   ++T    FE+L + +   +   +  +AIT F
Sbjct: 138 FDCRYVTTTSGMFEALCNHIKYSTNKGNIRSAITIF 173


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 4   VNRETDLADQDPANVERRYTHFLDLYNGLKKEQPTL 39
           +N   D+ +QD    +RR  H  D    L+ E+  L
Sbjct: 323 LNILVDMCEQDIIQNDRRTRHLSDRVVALEAEKKNL 358


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 130 VVLCALCRIVACAGASDGTLAGP 152
           + + + C IV CA   D    GP
Sbjct: 50  IAMSSACGIVQCAKGPDELCGGP 72


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.136    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,427
Number of Sequences: 429
Number of extensions: 2514
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 5
length of query: 227
length of database: 140,377
effective HSP length: 56
effective length of query: 171
effective length of database: 116,353
effective search space: 19896363
effective search space used: 19896363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)